Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq36 141 1e-28 seq293 116 5e-21 >seq36 Length=6822877 Score = 141 bits (156), Expect = 1e-28 Identities = 398/596 (67%), Gaps = 19/596 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| | || | | | || ||||| |||||||| || || | ||||| || | Sbjct 1784179 TGTTTCCGATCCGCTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCTTTCT 1784120 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||| | ||||| || ||||||||| | || || | | ||| | || || | || Sbjct 1784119 GGACAGCAGAAGAAGTTGATCTGTCCCAAGATCTCCGCCACTGGAATGAATCCCTCACCT 1784060 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || || || | || || | ||| || | || ||||| |||| ||||| |||||| Sbjct 1784059 CCGAC-GAACGGCATTTCGTAACCCACGTTCTCGCTTTCTTCGCCGCTTCCGACGGAATC 1784001 Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || || || || | || | || ||| | ||| | | || |||| | || | Sbjct 1784000 GTTCTAGAGAACCTCGCTGGC-CGCTTCATGCGGGAGGTACAGCTCCCGGAGGCG-CGCG 1783943 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| || ||||| || ||| || || ||| | ||||| || |||||| | ||| Sbjct 1783942 CTTTCTATGGATTTCAGATCGCCATCGAAAACATCCACTCCGAGATGTAC---AGCCTGC 1783886 Query 125293 TT---GACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 || || | ||||| || |||||| | || | || ||||| | || ||||| Sbjct 1783885 TTCTCGAAACCTACATCAAAGACTCCGCAGAGAAATCGCAC-CTCTTCCATGCTATCGAG 1783827 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | ||||| || |||| | || |||||||| | | | | Sbjct 1783826 ACCGTTCCCTGCGTCGCCCGCAAGGCACAGTGGGCTCTCCGCTGGATCGACGCCTCCGAT 1783767 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 |||| || || || | | ||||| || ||| |||||||||||||| || ||| Sbjct 1783766 TCTTTT---GCAGAGCGAATTCTTGCATTTGCTTGCGTTGAGGGCATCTTCTTCTCTGGT 1783710 Query 125469 AGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 ||||| |||| ||||||| ||||| |||||| | || || ||||| || || || Sbjct 1783709 AGTTTCTGCG-CCATCTTCTGGCTGAAGAAGAGAGGGCTAATGCCTGGTCTCACTTTTTC 1783651 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 |||||| |||| ||||| || |||||||| |||||||||||||| ||| |||| Sbjct 1783650 CAACGAGCTTATTTCTCGTGATGAGGGCCTGCACTGTGACTTTGCGTGTCTGCTGT 1783595 >seq293 Length=413263 Score = 116 bits (128), Expect = 5e-21 Identities = 391/590 (66%), Gaps = 29/590 (5%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| | || | | | |||||||| |||||||| || || ||||||| || | Sbjct 226521 TGTTCCCGATCCGCTACCCTCAGATTTGGGAGATGTACAAGAAAGCAGAGGCCTCTTTCT 226580 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG--ATTGGGAG-ACTCGTTTGA 125112 |||| | |||||||||||||| || | ||| || || | ||||| || | | Sbjct 226581 GGACTGCGGAAGAGGTCGATCTCTCACAAGAC--GTTCGGCAATGGGATCACACCCTCAC 226638 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 || || ||||| | ||||| | || | |||||||||| |||| || ||||| | Sbjct 226639 CTCTGAC-GAGCGCCACTTTATCACCTACGTCCTGGCCTTCTTCGCCGCTTCTGATGGTA 226697 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCG 125231 |||| || || || ||| ||| | |||| || | | |||| |||| | || Sbjct 226698 TCGTGCTGGAGAACCTCGCCGGACGCTTCATGCGAGAGGTTCAAC-TTCCGGAGGCG-CG 226755 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| || || ||||| ||| || || ||| | ||||| || ||||| | || Sbjct 226756 CGCTTTCTATGGCTTCCAGATCGCCATCGAAAACATTCACTCCGAGATGTATAGTCTTCT 226815 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAACAC-ATGCTCTTTAACGCAATCGACA 125349 | || | ||||| || | || || ||| | | || ||| ||| ||||| | Sbjct 226816 CCTCGAGACCTACATCAAGGACTC-CACCGAAAAATCCAATCTTTTTCGCGCCATCGAAA 226874 Query 125350 CGGTGCCGTCTATA---CGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || || | | ||||| |||||| |||| | || ||||| ||||| | Sbjct 226875 CCGTACCCTGCGTCGCCCGTAA---GGCTCAGTGGGCACTGCGCTGGAT---TGACGCC- 226927 Query 125407 AGTCT---TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 ||| || | || || | | | || || || ||| || || || ||||| | Sbjct 226928 --TCTGAATCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCT 226985 Query 125464 CGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || || || |||| ||||||| ||||||||||||||||| | ||||| || || || Sbjct 226986 CCGGCAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACT 227044 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||||| | || ||||| |||||||| || ||||| |||||||| Sbjct 227045 TTTTCTAACGAGCTCATCTCTCGTGACGAGGGACTCCACTGCGACTTTGC 227094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740229361907840