Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq640 98.7 8e-16 seq876 86.0 5e-12 >seq640 Length=221176 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| || ||||| |||||||||||||| || | || | ||||||| ||||| Sbjct 161968 GTGAAGCGTCGATTCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTG 162027 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || | | ||||||||| || | |||||| ||||| ||| || Sbjct 162028 CTTCCCAGCAAAGATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT 162087 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTG 19016 | ||| || | | ||| || || | ||| |||| |||| ||| || || || || | Sbjct 162088 CGCTTTAACGTTGTCGATCGTGTC-CGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCG 162146 Query 19017 TTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| |||||||| || |||||||| || Sbjct 162147 TTAGGGTTTTGACGAAGATTTGCATCTT 162174 >seq876 Length=1913211 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||||||||| ||||| || | ||| | | ||||| || || || || Sbjct 666196 GTGGACTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCCTCGAGTTGCTTGCCG 666255 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||||||||| ||| | |||||| || || || || ||| Sbjct 666256 GCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTT 666315 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || || |||| |||| ||| ||||| || || || | || Sbjct 666316 ACGTTGTCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 666375 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 666376 TTGACGAAAATCTGCAT 666392 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||| ||||| || ||||||||||| || | ||| | | ||||| Sbjct 666411 CACAAGGTGTAGGGTAGATTCCTTCTGGATATTGTAATCAGCAAGGGTTCGGCCATCCTC 666470 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || ||||| |||||| || | |||||| ||||| Sbjct 666471 TAGCTGCTTTCCGGCAAAGATCAGCCTCTGTTGATCCGGCGGGATGCCCTCCTTGTCCTG 666530 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| ||||| | |||| || | ||| ||||| || Sbjct 666531 TATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCCACCTCAAGGGTGATGGTCTT 666590 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | |||||||| || || ||||| Sbjct 666591 GCCTGTGAGGGTTTTGACGAAGATCTGCAT 666620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414120167344096