Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq258 167 4e-37 seq2 156 7e-34 seq134 141 1e-29 seq509 122 1e-23 seq68392 105 1e-18 seq174 104 4e-18 seq908 95.1 2e-15 seq160 93.3 7e-15 >seq258 Length=1945713 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||| || || ||||||||||||||||| ||||| || ||| Sbjct 764135 GCGAAGCGCCATCGCAAAGTTCTGCGCGACAACATCCAAGGAATCACGAAGCCGGCGATC 764076 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || ||||| || |||||| || || ||| |||| || |||| Sbjct 764075 CGGCGACTTGCTCGGCGCGGTGGGGTTAAGCGTATCAGCGGTTTGATCTACGAGGAGACC 764016 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | |||||||| || ||| || |||| ||||||| | |||||||||| Sbjct 764015 AGGGGAGTTCTCAAGATCTTTCTTGAGAATGTAATCCGTGATGCTGTTACCTATACCGAG 763956 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| || |||||||| || | ||||| | || || || | || || |||||| Sbjct 763955 CATGCTCGTCGCAAGACTGTTACTGCTATGGACGTTGTGTACGCGCTTAAGCGCCAAGGC 763896 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| ||||||| ||||| ||||| Sbjct 763895 CGTACTCTTTATGGCTTTGGTGGTTAA 763869 Score = 141 bits (156), Expect = 1e-29 Identities = 191/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 756137 GCGAAGCGCCACCGCAAAGTCCTCCGAGACAACATCCAAGGCATCACGAAGCCGGCGATC 756078 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || ||||| ||||| || ||| ||| |||| || |||| Sbjct 756077 CGGCGACTTGCTCGGCGGGGAGGAGTTAAGCGGATCAGTGGCTTGATCTACGAGGAGACC 756018 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||||| || || ||| ||||||| ||| ||| | ||| |||||| Sbjct 756017 CGAGGAGTGCTCAAGATATTTCTTGAGAATGTTATCCGTGACGCTGTTACCTACACCGAG 755958 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| | ||||| | || || || | || ||||| ||| Sbjct 755957 CACGCTCGCCGGAAGACCGTCACTGCTATGGACGTGGTTTACGCTCTCAAGCGTCAGGGC 755898 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | ||||||| || || |||| Sbjct 755897 CGCACCCTTTATGGGTTCGGCGGTTA 755872 >seq2 Length=81761211 Score = 156 bits (172), Expect = 7e-34 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || |||||||||||||| ||| Sbjct 54792246 GCCAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCGATC 54792187 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || ||||| || ||| | |||| || |||| Sbjct 54792186 CGTCGTCTCGCTCGCCGCGGTGGCGTGAAGCGCATCAGTGGCCTCATCTACGAGGAGACG 54792127 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||||||||||| ||| ||| |||| |||||| | ||| || ||| Sbjct 54792126 CGAGGTGTGCTCAAGATCTTCCTTGAGAACGTCATCCGCGATGCTGTGACCTACACTGAG 54792067 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| |||||||| | || ||||| | || ||||| || Sbjct 54792066 CACGCTCGCCGGAAGACCGTCACAGCCATGGATGTTGTTTATGCCCTCAAGCGTCAGGGT 54792007 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | ||||| || || |||| Sbjct 54792006 CGCACCCTCTATGGCTTCGGCGGTTA 54791981 Score = 136 bits (150), Expect = 6e-28 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||| || |||||||||||||| ||||| ||||| || ||| Sbjct 14311467 GCAAAGCGCCATCGCAAGGTTCTCCGCGATAACATCCAAGGCATCACTAAGCCGGCGATC 14311526 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| ||||| || || ||||| | ||| | |||| || || | Sbjct 14311527 CGCCGCCTTGCTCGCCGTGGCGGCGTTAAGCGCATTAGTGGGCTTATCTACGAGGAAACA 14311586 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| ||||||| || || ||| ||| || | ||||| | |||||| ||| Sbjct 14311587 AGAGGTGTTCTGAAGATATTTCTGGAGAACGTCATTCGCGATGCAGTAACCTATACTGAG 14311646 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || ||||||||| |||||||| | |||||| | | || ||||| || Sbjct 14311647 CACGCTCGTCGCAAAACTGTCACCGCCATGGATGTTGTCTATTCCCTCAAGCGTCAGGGA 14311706 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 14311707 CGCACTCTCTACGGATTTGG 14311726 >seq134 Length=4609009 Score = 141 bits (156), Expect = 1e-29 Identities = 188/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | ||| ||||| ||||||||||| || || ||||| || || Sbjct 967101 CGCGAAGCGCCACCGCAAAGTTCTCCGAGACAACATCCAAGGCATTACGAAGCCGGCGAT 967160 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | ||||| || || |||||| || || || |||| || |||| Sbjct 967161 CCGACGGCTGGCGAGGCGTGGCGGCGTAAAGCGTATCAGCGGTCTGATCTACGAGGAGAC 967220 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||||||| ||| ||| || || | ||||| || ||||| || Sbjct 967221 GCGCGGGGTTCTGAAGATCTTTCTCGAGAATGTCATACGCGATGCGGTCACATATACGGA 967280 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || |||||||| || |||||||| | || || || | || || || || Sbjct 967281 GCACGCTCGCCGGAAGACTGTTACGGCCATGGATGTTGTGTACGCGCTCAAGCGCCAGGG 967340 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 967341 ACGCACCCTTTATGGATTTGG 967361 >seq509 Length=3532775 Score = 122 bits (134), Expect = 1e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||| || ||||| || |||||||||||| | |||| ||| || ||||| || | Sbjct 417815 TCTCCGAGACAATATCCAGGGCATCACCAAGCCAACGATCCATCGACTCGCTCGCCGCCG 417874 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||||| || ||| ||| |||| || | ||| || | | | |||||||| Sbjct 417875 TGGCGTAAAGCGCATCAGTGGTTTGATCTACGAGGGGATGCGAGGCATGCTCAAGATCTT 417934 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| ||| || ||| | ||| || ||||||||| || |||||||| Sbjct 417935 CCTTGAGAACGTCATCTGCGACGCTATGACCTACACTGAGCACGCTCGCCGAAAGACTGT 417994 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAAC 16664 ||| |||||||| | || ||||| | |||| Sbjct 417995 CACAGCCATGGATGTTGTTTATGCCCTCAAAC 418026 >seq68392 Length=105900 Score = 105 bits (116), Expect = 1e-18 Identities = 182/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | | ||| | || || ||||| || || ||||| ||||| || || Sbjct 2819 GCGAAGCGTCATCGGAAAGTCT-TGCGCGACAACATTCAGGGCATCACGAAGCCGGCGAT 2761 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || ||||| || ||||| | || | | || ||||| | Sbjct 2760 CCGCCGTCTCGCTCGCCGCGGTGGCGTGAAGCGCATTAGCGGCCTAATTTACGAAGAAAC 2701 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | |||||||| || ||| |||||| | || ||| | |||||| || Sbjct 2700 GCGTGGGGTGCTCAAGATCTTTCTTGAGAACGTTATACGCGACGCTGTTACCTATACTGA 2641 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||| || ||||||| | || || || | || || || || Sbjct 2640 GCACGCCCGCCGGAAGACTGTTACGGCCATGGACGTTGTGTACGCCCTCAAGCGCCAGGG 2581 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 || | | || || |||||| Sbjct 2580 ACGAACTCTCTACGGATTTGGA 2559 >seq174 Length=2424544 Score = 104 bits (114), Expect = 4e-18 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 || || || || |||||||||||| | || ||||| | |||| ||||||||| || ||| Sbjct 497114 AATATTCAGGGCATCACCAAGCCAACGATTCGTCGATTAGCTCATCGTGGTGGCGTGAAG 497055 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 || | ||| || |||| || |||| || | | | |||||||| || ||| | Sbjct 497054 CGCATAAGTGGTATGATCTACGAGGAGACGCGAGGCATGCTCAAGATCTTTCTTGAGAAC 496995 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 || || || || | | | ||| |||||||||||| || ||||| ||| ||||| Sbjct 496994 GTCATACACGACGTTGTGACCTACACCGAGCACGCTCGCCGGAAGAC--CCACAGCCATG 496937 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | || ||||| | ||| |||| || || | ||||||| ||||| |||| Sbjct 496936 GATGTTGTTTATGCCATCAAATGTCAGGGTCGCATCCTTTATGGCTTTGGTGGTTA 496881 >seq908 Length=243134 Score = 95.1 bits (104), Expect = 2e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| | ||| || || || || |||| ||||||||| |||| | | | |||| || | Sbjct 31727 TCTCCAAGACAATATTCAGGGCATCATCAAGCCAGCAATCCCTTGCATCACTCGCCGCGA 31786 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || |||||||| || ||| || ||||||| | || || | | | |||||||| Sbjct 31787 AGGCGTCAAGCGCATCAGTGGTCTGATCTATGAGGGGACGCGAGGAATGCTCAAGATCTT 31846 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || ||||||||| | | |||| |||||||| ||| | ||||| | Sbjct 31847 CCTTGAGAAGGTAGTCCATGATGTTGTGAACTACACCGAGCATGCTTGTCAGAAGACCAT 31906 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || ||||| | || ||||| | || |||||||| || Sbjct 31907 CACAGCCCTGGATGTTGTTTATGCCCTCAAGCGTCAAGGGCG 31948 >seq160 Length=604546 Score = 93.3 bits (102), Expect = 7e-15 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA-GTCAA 16521 ||||| || || |||| |||| || || | | | |||||| |||| || | | ||||| Sbjct 374362 AACATTCAGGGCATCATAAAGCTGGCGATTCTTTGCCTGGCTTGTCGAGGGGAAAGTCAA 374303 Query 16522 GCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGAC 16581 || | || ||| ||||||| |||| ||| || | | ||||| || ||| ||| Sbjct 374302 GCCATAAGC-GGCTTGTTCTATGAGGAGACTCGCGACATGCTTAAGATTTTTCTCGAGAT 374244 Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 ||||||| || | | ||| |||||| |||||| || |||| |||| | || | || Sbjct 374243 -GTTATCCGCGACGTTGTCCTCTATACGGAGCACACTGGTCGTAGGACTATTACTGCGAT 374185 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | || || ||||||| ||||| ||| || | | | | ||||||||||| |||| Sbjct 374184 GAATGTCATCTATGCTTTGAAGCGTTAATGTTGCACTCTCTATGGTTTTGGTTGTTA 374128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78993292721712