Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq89584 538 1e-148 seq2 230 7e-56 seq374 226 8e-55 seq64191 201 3e-47 seq70034 82.4 2e-11 >seq89584 Length=148959 Score = 538 bits (596), Expect = 1e-148 Identities = 710/979 (73%), Gaps = 4/979 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || ||||| || ||||| ||||| | || |||||||| || | ||||| ||| Sbjct 1128 TGGATTACCAGTACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 1069 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| | | || ||| || ||||| | ||||| || || || || || || ||| Sbjct 1068 ACTTTATTGACCGCAACTTCTGTATTTATCATTGCCTTCATTGCTGCCCCTCCAGTCGAT 1009 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| || ||||| || || || | || |||||||||||||| || Sbjct 1008 ATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCA 949 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | ||| || ||||| |||| ||||| || || |||||||| Sbjct 948 GGTGCCATTATTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCA 889 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || | ||||||||||||||||| |||||||| ||| ||||| |||| | ||||| Sbjct 888 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTTATTGTTCTACACTTT 829 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| | || ||||| ||| ||| | |||||||||| || | | | || ||| Sbjct 828 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 769 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || |||||| |||| || | | || ||| ||||| ||||| Sbjct 768 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGCTGT-TTTCTT 710 Query 19719 GTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777 | | ||||| |||| ||||| ||||| ||||||||||||| | || || |||||||| Sbjct 709 GATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 650 Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837 ||| ||||| ||| | |||||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 649 TTTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATTCTTATGCATCCATTTCACAT 590 Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897 | | || || ||||| |||||||| || || || ||| ||||||||| || |||||| Sbjct 589 GTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGT 530 Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957 ||||| | |||| |||||| ||||| ||| || || | || || | || Sbjct 529 AACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATT 470 Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017 || ||||| ||||| || ||||||||||| || || || || || ||||| ||||||| Sbjct 469 TGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 410 Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077 || ||||||||| |||||| ||||| ||||| || |||||||| | ||| ||| || Sbjct 409 CTTCCAATATGCTAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCC 350 Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137 || || || || ||| | || | |||| || | |||||||| |||||| | || || Sbjct 349 TGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGG 290 Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTG 20196 |||||| |||||||| || ||||||||| | ||| | | || | | || ||||||| Sbjct 289 TTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCGTGTTATTAAC-ACTTGGGCTG 231 Query 20197 ATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACT 20256 || | ||||| | ||||| || || | ||||| ||||| || || ||||| || |||| Sbjct 230 ATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACT 171 Query 20257 TCCCACTTGATTTAGCTTC 20275 |||| || ||| ||||||| Sbjct 170 TCCCTCTAGATCTAGCTTC 152 >seq2 Length=81761211 Score = 230 bits (254), Expect = 7e-56 Identities = 304/419 (73%), Gaps = 2/419 (0%) Strand=Plus/Plus Query 19858 TCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGG 19917 |||| || || || ||| ||||||||| || |||||| ||||| | |||| || Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGG 48005825 Query 19918 AAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACAT 19977 |||| ||||| ||| || || | || || | || || ||||| ||||| || | Sbjct 48005826 AAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCT 48005885 Query 19978 ATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCA 20037 |||||||||| || || || || || ||||| ||||||| || ||||||||| ||||| Sbjct 48005886 ATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCA 48005945 Query 20038 ATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTA 20097 | ||||| ||||| || |||||||| | ||| ||| || || || || || ||| | | Sbjct 48005946 ACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCA 48006005 Query 20098 CCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAG 20157 | | |||| || | |||||||| |||||| | || |||||||| |||||||| || | Sbjct 48006006 CTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCG 48006065 Query 20158 TAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAAC 20216 |||||||| | ||| | | || | | || ||||||||| | ||||| | ||||| Sbjct 48006066 TAGTTGATAGCCAAGGTCGTGTTATTAAC-ACTTGGGCTGATATCATAAATCGTGCTAAT 48006124 Query 20217 CTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTC 20275 || || | ||||| ||||| || || ||||| || |||||||| || ||| ||||||| Sbjct 48006125 CTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTC 48006183 >seq374 Length=1248919 Score = 226 bits (250), Expect = 8e-55 Identities = 302/417 (72%), Gaps = 2/417 (0%) Strand=Plus/Plus Query 19860 GGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAA 19919 || || || || ||| ||||||||| || |||||| ||||| | |||| |||| Sbjct 600774 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGGAA 600833 Query 19920 ACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATAT 19979 || ||||| ||| || || | || || | || || ||||| ||||| || ||| Sbjct 600834 ACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTAT 600893 Query 19980 AATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAAT 20039 |||||||| || || || || || ||||| ||||||| || ||||||||| |||||| Sbjct 600894 AATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC 600953 Query 20040 AATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACC 20099 ||||| ||||| || |||||||| | ||| ||| || || || || || ||| | || Sbjct 600954 AATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACT 601013 Query 20100 TCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTA 20159 | |||| || | |||||||| |||||| | || |||||||| |||||||| || ||| Sbjct 601014 GCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTA 601073 Query 20160 GTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCT 20218 |||||| | ||| | | || | | || ||||||||| | ||||| | ||||| || Sbjct 601074 GTTGATAGCCAAGGTCGTGTTATTAAC-ACTTGGGCTGATATCATAAATCGTGCTAATCT 601132 Query 20219 CGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCTTC 20275 || | ||||| ||||| || || ||||| || |||||||| || ||| ||||||| Sbjct 601133 TGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTC 601189 >seq64191 Length=168564 Score = 201 bits (222), Expect = 3e-47 Identities = 353/509 (69%), Gaps = 4/509 (1%) Strand=Plus/Plus Query 19310 TACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGC 19369 |||| | ||||| ||||| | || || ||||| | | ||||| ||| ||| | | Sbjct 58576 TACCAAAAACCGTCTTTACATCGGATGATTTGGTATTTTGATGATCCCTACTTTATTGAC 58635 Query 19370 TGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCAT 19429 || ||| | ||||| | ||||| || || || | || | ||||| ||||| || Sbjct 58636 CGCAACTTATGCATTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTAT 58695 Query 19430 ACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGTAG 19488 ||||| || ||||| || || || | || |||||||||||||| || | | || || Sbjct 58696 TCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTA- 58754 Query 19489 TTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAG 19548 |||| | ||| || ||||| |||| ||||| || || ||||||| | || | | Sbjct 58755 TTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTTG 58814 Query 19549 ATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAG 19608 ||||||||||||||||| |||||| ||| ||||| |||| | |||| ||| | || | Sbjct 58815 ATGAGTGGTTATACAACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGTG 58874 Query 19609 TAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGA 19668 |||| ||| ||| | |||||||||| || | | | || ||| | || |||| Sbjct 58875 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGA 58934 Query 19669 TATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCA 19727 | || |||||| |||| || | | || ||| |||| || || | | ||||| Sbjct 58935 TTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAACTGT-TTACTTGATCTACCCT 58993 Query 19728 TTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTT 19787 |||| ||||| ||||| ||||||||||||| | || || ||||||| ||| ||||| Sbjct 58994 ATTGGCCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTC 59053 Query 19788 ATGTTCGTATTCCAAGCAGAACACAATAT 19816 ||| | |||| ||| |||| ||||| || Sbjct 59054 ATGATTGTATGCCAGTCAGAGCACAACAT 59082 >seq70034 Length=501258 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 19513 TGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTC 19572 |||| ||||| | || |||||||| |||| | ||||||||||||||||| ||||||| Sbjct 182427 TGCATTTTTACACAATATGGGAAGCAA-CACTGTTGATGAGTGGTTATACAATGGCGGTC 182369 Query 19573 CATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGT 19632 | ||| |||| |||| | ||||| | | | || ||||| |||| || | ||| Sbjct 182368 CTTATGAACTGATTGTTCTACACTTTTGACTTGGTGTAGCTTGTTACGTGTGTTGTGAGT 182309 Query 19633 GGGAACTATCTT 19644 |||||||| ||| Sbjct 182308 GGGAACTAACTT 182297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144287941581504