Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq876 86.0 5e-12 seq2 86.0 5e-12 >seq876 Length=1913211 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| || || || || || | |||| | | ||||| | ||| Sbjct 666190 TGAAGGGTGGACTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCCTCGAGTTGC 666249 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| || ||| || | |||||| || || || || Sbjct 666250 TTGCCGGCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTA 666309 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| || | ||||||||| || || | Sbjct 666310 GC--CTTTACGTTGTCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAG 666367 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| ||||||||||| Sbjct 666368 TGAGGGTCTTGACGAAAATCTGCAT 666392 >seq2 Length=81761211 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| |||| || | ||||| | ||| Sbjct 19640708 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGCCCATCCTCAAGTTGC 19640767 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | ||||||| ||| |||||| ||| | |||||| ||||| || || Sbjct 19640768 TTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 19640827 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | ||||| | ||| |||| ||| ||||| || || | Sbjct 19640828 GCT--TTCACGTTATCGATGGTGTCCGAGCTCTCAACCTCCAAGGTAATGGTCTTCCCAG 19640885 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| Sbjct 19640886 TAAGAGTCTTCACGAAGATCTGCAT 19640910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404645722896160