Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 seq876 93.3 3e-14 seq258 82.4 5e-11 >seq2 Length=81761211 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 24438405 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 24438464 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 24438465 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24438499 Score = 105 bits (116), Expect = 4e-18 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956 ||||||||||| |||| |||||||||||| ||||||| | |||| || |||||||| Sbjct 18192236 AAGCCCGTTCCTTTGGTTGTGGTTTCGCTGGATAGTAAACAGGGACAGTGAGAATCTCGT 18192295 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||| | |||||||||||||||||||||||||| Sbjct 18192296 TAATACATTCATGCGCGTCACTAATTAGATGAC 18192328 Score = 104 bits (114), Expect = 2e-17 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956 ||||| |||||||||||||||||||| | ||||||||| |||| || |||||| | Sbjct 19145006 AAGCCTGTTCCCTTGGCTGTGGTTTCATTGGATAGTAGACAGGGACAGTGCGAATCTCAT 19145065 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| |||||||||||||||||| Sbjct 19145066 TAATCCATTCATGCGCTTCACTAATTAGATGACGA 19145100 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||| | Sbjct 18194237 CTCTCTTTTCAAAGTTCTTTTCATCTTTCTCTCACGGTACTTGTTCGCTATCAGTCTCAC 18194296 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||| ||| Sbjct 18194297 GCCCGTATTTAGGCTT 18194312 >seq876 Length=1913211 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | || | ||||| |||||||| ||||| ||||||||||| || | Sbjct 665708 TACCACCACGAAGGCGGAGCACCAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTG 665767 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | ||| || || ||||| || || ||||| || || | | Sbjct 665768 CCAGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATCAGCCGTTGCTGGTCTGGAG 665827 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| ||||| ||||| || | | |||||| || || | Sbjct 665828 GGATGCCCTCCTTGTCCTGGATTTTGGCTTTCACGTTATCAATAGTATCAGAGCTCTCCA 665887 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || |||||||| ||||| | || ||||| ||||||||||| Sbjct 665888 CCTCAAGGGTGATAGTTTTCCCCGTAAGTGTCTTCACAAATATCTGCAT 665936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||| | ||| | || || || ||||| || ||||||||||||| | Sbjct 666394 CCACCCCTAAGACGAAGCACAAGGTGTAGGGTAGATTCCTTCTGGATATTGTAATCAG-C 666452 Query 38151 AAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || ||||| || |||| || ||||||||||| || || | |||||||| | Sbjct 666453 AA---GGGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAGCCTCTGTTGATCCGG 666509 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| ||| || |||||| || || |||||| || | || ||||| ||| || Sbjct 666510 CGGGATGCCCTCCTTGTCCTGTATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTC 666569 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || || | |||||| ||||| |||||||| Sbjct 666570 CACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 666620 >seq258 Length=1945713 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | | ||| || ||||| ||||| |||||| ||||| |||||||| | Sbjct 1660558 CCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCTGCT 1660499 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || ||||| ||||| || ||||| || | ||||||||||| | || Sbjct 1660498 AAGGTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 1660439 Query 38211 ACGCCTTCTTTGTCC 38225 | |||||| |||||| Sbjct 1660438 ATGCCTTCCTTGTCC 1660424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334581502972304