Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2 131 1e-25
seq876 93.3 3e-14
seq258 82.4 5e-11
>seq2
Length=81761211
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 24438405 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 24438464
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 24438465 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24438499
Score = 105 bits (116), Expect = 4e-18
Identities = 80/93 (86%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956
||||||||||| |||| |||||||||||| ||||||| | |||| || ||||||||
Sbjct 18192236 AAGCCCGTTCCTTTGGTTGTGGTTTCGCTGGATAGTAAACAGGGACAGTGAGAATCTCGT 18192295
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||| | ||||||||||||||||||||||||||
Sbjct 18192296 TAATACATTCATGCGCGTCACTAATTAGATGAC 18192328
Score = 104 bits (114), Expect = 2e-17
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956
||||| |||||||||||||||||||| | ||||||||| |||| || |||||| |
Sbjct 19145006 AAGCCTGTTCCCTTGGCTGTGGTTTCATTGGATAGTAGACAGGGACAGTGCGAATCTCAT 19145065
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||| ||||||||||||||||||
Sbjct 19145066 TAATCCATTCATGCGCTTCACTAATTAGATGACGA 19145100
Score = 93.3 bits (102), Expect = 3e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
Sbjct 18194237 CTCTCTTTTCAAAGTTCTTTTCATCTTTCTCTCACGGTACTTGTTCGCTATCAGTCTCAC 18194296
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||| |||
Sbjct 18194297 GCCCGTATTTAGGCTT 18194312
>seq876
Length=1913211
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | || | ||||| |||||||| ||||| ||||||||||| || |
Sbjct 665708 TACCACCACGAAGGCGGAGCACCAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTG 665767
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|| || | || || | ||| || || ||||| || || ||||| || || | |
Sbjct 665768 CCAGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATCAGCCGTTGCTGGTCTGGAG 665827
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||| || |||||| ||||| ||||| || | | |||||| || || |
Sbjct 665828 GGATGCCCTCCTTGTCCTGGATTTTGGCTTTCACGTTATCAATAGTATCAGAGCTCTCCA 665887
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || |||||||| ||||| | || ||||| |||||||||||
Sbjct 665888 CCTCAAGGGTGATAGTTTTCCCCGTAAGTGTCTTCACAAATATCTGCAT 665936
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| || | ||| | ||| | || || || ||||| || ||||||||||||| |
Sbjct 666394 CCACCCCTAAGACGAAGCACAAGGTGTAGGGTAGATTCCTTCTGGATATTGTAATCAG-C 666452
Query 38151 AAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206
|| ||||| || |||| || ||||||||||| || || | |||||||| |
Sbjct 666453 AA---GGGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAGCCTCTGTTGATCCGG 666509
Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266
|||| ||| || |||||| || || |||||| || | || ||||| ||| ||
Sbjct 666510 CGGGATGCCCTCCTTGTCCTGTATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTC 666569
Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || | || || || || || || | |||||| ||||| ||||||||
Sbjct 666570 CACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 666620
>seq258
Length=1945713
Score = 82.4 bits (90), Expect = 5e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | | ||| || ||||| ||||| |||||| ||||| |||||||| |
Sbjct 1660558 CCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCTGCT 1660499
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || ||||| ||||| || ||||| || | ||||||||||| | ||
Sbjct 1660498 AAGGTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 1660439
Query 38211 ACGCCTTCTTTGTCC 38225
| |||||| ||||||
Sbjct 1660438 ATGCCTTCCTTGTCC 1660424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334581502972304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |