Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq258 114 1e-20 seq202 114 1e-20 seq876 111 1e-19 seq640 100 2e-16 seq2 87.8 2e-12 >seq258 Length=1945713 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||||||||| ||||| || | |||||||| || ||||| |||||| Sbjct 1660425 GACAAGGAAGGCATTCCACCTGATCAACAACGTTTGATTTTTGCTGGGAAACAGTTAGAA 1660484 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| || | | |||||||| ||||| || || || || || |||||||| | Sbjct 1660485 GATGGTCGGACCTTAGCAGATTACAACATTCAGAAGGAGTCAACTCTCCATTTAGTTTTG 1660544 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 1660545 AGGCTTAGAGGTGGAA 1660560 >seq202 Length=4793652 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | || || || | |||||| | ||||| ||| || Sbjct 4329121 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACAATCACACTTGAAGTTGAGAGCTCC 4329180 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| || || || ||||||||||| |||| Sbjct 4329181 GACACTATTGA--CAATGTTAAGGCTAAAATCCAAGATAAGGAGGGGATTCCACCGGACC 4329238 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | |||||||| || || || | || |||| |||||| | | || |||| Sbjct 4329239 AGCAGCGCCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCGGACTACA 4329298 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || ||||| || || ||| | ||||| Sbjct 4329299 ATATTCAGAAGGAATCTACTCTTCATCTTGTGCT 4329332 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || ||||||| | || || || ||| Sbjct 4329349 ATGCAAATCTTTGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTAGAAAGCTCT 4329408 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | || ||||| | || | ||| || || || || ||||| ||||| | Sbjct 4329409 GATACAATTGA-TAACGTGAAGGCGAAGATTCAG-GATAAGGAGGGCATTCCTCCTGATC 4329466 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || |||||||||||||| | || |||| |||||| ||| ||||| | Sbjct 4329467 AGCAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGTCGCACGCTGGCTGATTATA 4329526 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || |||||||| || || || Sbjct 4329527 ACATCCAGAAAGAATCGACACTTCA 4329551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| | ||||| | ||||| ||| || Sbjct 4328570 ATGCAGATTTTTGTGAAGACCCTAACTGGTAAGACGATCACTCTTGAAGTTGAGAGCTCC 4328629 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||||||||| ||||| || |||| Sbjct 4328630 GACACCATAGA--CAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCGGACC 4328687 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | |||||||| || || || | || |||| ||||| | | ||||| | Sbjct 4328688 AGCAGAGGTTAATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACACTTGCAGATTATA 4328747 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| || || || || || ||| | ||| | | || || ||||| Sbjct 4328748 ACATTCAGAAGGAGTCTACCCTCCATCTTGTGTTGCGACTCAGGGGAGG 4328796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| | ||||| ||| ||| Sbjct 4328798 ATGCAGATTTTCGTGAAGACGCTTACCGGCAAGACAATCACTCTTGAAGTTGAGAGCTCT 4328857 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || || ||||||||||| || || || |||| Sbjct 4328858 GACACCATTGA--CAATGTCAAGGCTAAGATACAGGACAAAGAAGGCATCCCTCCGGACC 4328915 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | |||| ||||| || || || | || |||| ||||| | | ||||||| Sbjct 4328916 AGCAAAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACA 4328975 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || |||||||| || || Sbjct 4328976 ACATTCAGAAGGAATCCACCCTCCA 4329000 >seq876 Length=1913211 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || ||| | ||||| | || |||||| ||| Sbjct 665936 ATGCAGATATTTGTGAAGACACTTACGGGGAAAACTATCACCCTTGAGGTGGAGAGCTCT 665877 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | || |||| |||||| ||||| || || || || || ||||| Sbjct 665876 GATACTATTGA-TAACGTGAAAGCCAAAATCCAGGACAAGGAGGGCATCCCTCCAGACCA 665818 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | || ||||| ||||| ||| | || |||| ||||| ||| || ||||| Sbjct 665817 GCAACGGCTGATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACCCTGGCAGACTACAA 665758 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||||| || || || | ||||| Sbjct 665757 TATTCAGAAGGAATCTACTCTTCACCTGGTGCT 665725 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| | || || || ||||||| | || |||||| ||| Sbjct 666164 ATGCAGATATTTGTCAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 666105 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| |||||| ||||| || || ||||| || ||||| Sbjct 666104 GACACTATAGACAACGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 666045 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || ||||| | || |||| || || | | ||||| || Sbjct 666044 CAAAGGCTGATATTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCTGATTATAAC 665985 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || |||||| | ||||| Sbjct 665984 ATCCAGAAGGAATCTACCCTACATCTCGTGCT 665953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| |||| |||||| ||| Sbjct 666392 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCT 666333 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| || || || || ||||| || || || Sbjct 666332 GACACCATCGACAACGTAAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAG 666273 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| ||| | || |||| || || | | ||||| ||| Sbjct 666272 CAGAGGCTGATCTTTGCCGGCAAGCAACTCGAGGATGGCCGAACCCTTGCTGATTATAAT 666213 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 |||||||| || ||||| || || Sbjct 666212 ATTCAAAAGGAGTCCACCCTTCA 666190 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| | || |||||| ||| Sbjct 666620 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTGGAGAGTTCT 666561 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || || ||||| || || || || || || ||| Sbjct 666560 GATACCATCGACAACGTGAAGGCTAAGATACAGGACAAGGAGGGCATCCCGCCGGATCAA 666501 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || |||| |||| || || | | ||||||||| Sbjct 666500 CAGAGGCTGATCTTTGCCGGAAAGCAGCTAGAGGATGGCCGAACCCTTGCTGATTACAAT 666441 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || ||||| | ||||| Sbjct 666440 ATCCAGAAGGAATCTACCCTACACCTTGTGCT 666409 >seq640 Length=221176 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || | ||||| |||| |||||||| || Sbjct 162171 ATGCAAATCTTCGTCAAAACCCTAACGGGGAAGACAATCACCCTCGAGGTGGAGTCCTCG 162112 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | |||| || | ||| ||||| || || |||||||| || || Sbjct 162111 GACACGATCGACAACGTTAAAGCGAAGATTCAG-GACAAGGAGGGCATTCCACCAGATCA 162053 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || || | || || | | ||||||||| Sbjct 162052 GCAGCGCTTAATCTTTGCTGGGAAGCAGCTTGAGGACGGCCGTACCCTCGCCGATTACAA 161993 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 |||||| || ||||| ||||| || Sbjct 161992 TATTCAGAAGGAATCGACGCTTCA 161969 >seq2 Length=81761211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || ||| | || | ||| | || || | || |||||| || Sbjct 19640682 ATGCAGATATTTGTGAAAACTCTTACTGAAAAAACTATTACCTTGGAGGTGGAGAGCTCG 19640623 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| ||| ||| ||||| ||||||||||||| ||||| Sbjct 19640622 GACACAATTGACAACATGAAGGTAAAGATCTAAGACAAGGAAGGGATTCCACAGGACCAG 19640563 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| |||| || || || | || |||| |||||| | | || | ||| Sbjct 19640562 CAGAGGCTTATCTTTGTCGATAAGCAGCTTGAGGATGGTCGCACCCTTGCAGACTCTAAT 19640503 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 19640502 ATCCAGAAGGAGTCCACACTCCA 19640480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432854890322960