Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq293 120 6e-22 seq86338 87.8 4e-12 seq54066 87.8 4e-12 >seq293 Length=413263 Score = 120 bits (132), Expect = 6e-22 Identities = 285/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || |||||||||| ||| |||| ||| ||||| || ||||| | || || || || | Sbjct 227364 TCAAAGAAATTAGTCTTACCCTGCAGCGAGATGAGTTCCATCCAATCAAATGGATTCGAT 227305 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| |||| || ||| || ||| | | | || |||||||| || || | | Sbjct 227304 ACACCATACATCTTGTCATAGCCCAGAGCTCCAACAAGCCGATCTGCCACGAATTCAATA 227245 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || | | ||| || || | |||||| || | | | || || | ||| ||||| | Sbjct 227244 TAGCGGCTCATTAGATCTGCGTTCATCCCCACAAGAGCGCAGGGGAGTGCATCACAAACA 227185 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 ||||||||||| | | || || || | ||||| || ||| || || | | Sbjct 227184 AATTCCTTTTCAATATCTACAGCATCGGCAACAATCTCCCGAACCCTCTCCTCCGAAATC 227125 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 ||||| ||| ||||| || |||| | ||| || |||||||| ||| Sbjct 227124 TTGTTGATCAGAAGGCTATACAGAAGGCAAGCAAAGTCGCAGTGGAGTCCCTCGTCACGA 227065 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| |||||| || | | || || ||||||| || || ||| ||||||||||| Sbjct 227064 GAGATGAGCTCGTTAGAAAAAGTGAGACCTGGCATCAAACCGCGCTTCTTGAGCCAGAAG 227005 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||| || ||||| | | ||| ||||| ||| | | || | || ||| Sbjct 227004 ATGGCGCAGAAGCTGCCGGAGAAGAAAATACCTTCGACGCACGCAAAAGCGAGAATCCGC 226945 Query 251983 TCAGCAAACGA 251993 |||||||| || Sbjct 226944 TCAGCAAATGA 226934 >seq86338 Length=33283 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 29010 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 29069 Query 142563 CCCCAC 142568 |||||| Sbjct 29070 CCCCAC 29075 >seq54066 Length=62098 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 55263 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 55204 Query 142563 CCCCAC 142568 |||||| Sbjct 55203 CCCCAC 55198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026657054060144