Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq293 154 3e-32 seq36 132 9e-26 >seq293 Length=413263 Score = 154 bits (170), Expect = 3e-32 Identities = 350/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||||||||||||||| ||||| || || || |||||||| ||| | |||||| Sbjct 226670 CTGGCCTTCTTCGCCGCTTCTGATGGTATCGTGCTGGAGAACCTCGCCGGACGCTTCATG 226729 Query 42483 AAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||||| || |||| ||||||||| ||||| ||||||||||| ||||| || | Sbjct 226730 CGAGAGGTTCA--ACTTCCGGAGGCGCGCGCTTTCTATGGCTTCCAGATCGCCATCGAAA 226787 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 || | ||||| ||| |||| || ||| | || |||||| ||| || ||| Sbjct 226788 ACATTCACTCCGAGATGTATAGTCTTCTCCTCGAGACCTACATCAAGGACTCCACCGAAA 226847 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | || || ||||| || || | |||||| || ||||| | |||| Sbjct 226848 AATCCAATCTTTTTCGCGCCATCGAAACCGTACCCTGCGTCGCCCGTAAGGCTCAGTGGG 226907 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || |||||| || | || || || | ||| || | | || ||| | Sbjct 226908 CACTGCGCTGGATTGACGCCTCTGAATCA---TTTGCTGAGCGGATTCTCGCTTTTGCGT 226964 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 |||||| || || |||||||| ||| |||| | ||||||||||||||||| || | Sbjct 226965 GCGTCGAAGGTATTTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCG 227024 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | |||||| || ||||| || || ||||| |||||| | |||||||| || || Sbjct 227025 GTTTGATGCCAGGTCTCACTTTTTCTAACGAGCTCATCTCTCGTGACGAGGGACTCCACT 227084 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | |||||||| ||||| ||| | |||| || | ||||| ||| ||||| ||| Sbjct 227085 GCGACTTTGCTTGCCTTCTG---TATAGCCTTCTGATCAACAAGATTTCGGAGGAGAGGG 227141 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 | |||| || | | || || || || || || ||||| || Sbjct 227142 TTCGGGAGATTGTTGCCGATGCTGTAGATATTGAAAAGGAATT 227184 >seq36 Length=6822877 Score = 132 bits (146), Expect = 9e-26 Identities = 345/522 (66%), Gaps = 8/522 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||||||||| || ||||| || || |||||||| || | | |||||| Sbjct 1784030 CTCGCTTTCTTCGCCGCTTCCGACGGAATCGTTCTAGAGAACCTCGCTGGCCGCTTCATG 1783971 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| ||| | ||||||||| ||||| || || ||||| ||||| || ||| Sbjct 1783970 CGGGAGGTACAGCTCCCGGAGGCGCGCGCTTTCTATGGATTTCAGATCGCCATCGAAAAC 1783911 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | || ||| | || |||||| || ||| ||| Sbjct 1783910 ATCCACTCCGAGATGTACAGCCTGCTTCTCGAAACCTACATCAAAGACTCCGCAGAGAA- 1783852 Query 42603 AACGGGC-TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | || | | ||| | || || ||||| | |||||| || ||||| | ||||| Sbjct 1783851 ATCGCACCTCTTCCATGCTATCGAGACCGTTCCCTGCGTCGCCCGCAAGGCACAGTGGGC 1783792 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| ||||||||| |||| | || | ||| | | | || ||| | Sbjct 1783791 TCTCCGCTGGATCGACGCCTCCGATTCT---TTTGCAGAGCGAATTCTTGCATTTGCTTG 1783735 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| ||||||||||||||||| || ||| | ||||||||||||| ||| ||| | Sbjct 1783734 CGTTGAGGGCATCTTCTTCTCTGGTAGTTTCTGCGCCATCTTCTGGCTGAAGAAGAGAGG 1783675 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | ||||| || ||||| || || ||||| || || | || ||||| ||||| | Sbjct 1783674 GCTAATGCCTGGTCTCACTTTTTCCAACGAGCTTATTTCTCGTGATGAGGGCCTGCACTG 1783615 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 |||||||| || || |||| | || | |||| | |||| ||| |||| |||| Sbjct 1783614 TGACTTTGCGTGTCTGCTGTAC---AGTCTGCTCAATAATAAGCTCTCTGAGGATAGGGT 1783558 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 | | || | | || || || || || |||| |||||| Sbjct 1783557 TAGAGAGATTGTTGCTGATGCTGTAGATATAGAGAGGGAGTT 1783516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943281728963840