Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq876 87.8 1e-12 seq2 82.4 6e-11 >seq876 Length=1913211 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||| || ||||||||||| ||||| ||||||| || Sbjct 665719 AGGCGGAGCACCAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGCCAGGGTGCGG 665778 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||||||| ||||| ||||| || ||||| || || | || ||| Sbjct 665779 CCATCCTCCAGTTGCTTGCCAGCAAAGATCAGCCGTTGCTGGTCTGGAGGGATGCCCTCC 665838 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 |||||| | |||| |||| |||| ||||| ||| || || || ||| Sbjct 665839 TTGTCC-TGGATTTTGGCTT--------TCACGTTATCAATAGTATCAGAGCTCTCCACC 665889 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||||| || || ||||| |||||||| || ||||| Sbjct 665890 TCAAGGGTGATAGTTTTCCCCGTAAGTGTCTTCACAAATATCTGCAT 665936 >seq2 Length=81761211 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || || || || || ||| ||||||||| |||||||| ||||| Sbjct 19640912 CCTCCCCTCAGACGTAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGC- 19640970 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || |||| ||||||||||| || |||| | |||||||| || Sbjct 19640971 AAGGGTACGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGATCGGGAGG 19641030 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || |||||| ||| |||||| Sbjct 19641031 GATGCCCTCTTTATCCTGAATTTT 19641054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396628885286368