Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq876 149 1e-30 seq700 131 4e-25 seq2 107 5e-18 seq202 102 2e-16 >seq876 Length=1913211 Score = 149 bits (164), Expect = 1e-30 Identities = 150/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| |||||| || ||||| || | ||||| || |||||| Sbjct 530141 TCTTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCGTCCTCAAGCTGTTTGCCAGCGAAG 530082 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| ||| |||||||||||| |||||||||||||| | || |||||| Sbjct 530081 ATCAGCCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGGATTTTAGACTTAACGTTT 530022 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | |||| ||| || || || || || || ||||| ||||| || |||||| Sbjct 530021 TCAATCGTATCGGAGCTC---TCCACGTCAAGGGTTATTGTCTTGCCGGTGAGGGTCTTG 529965 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 529964 ACAAATATCTGCAT 529951 Score = 125 bits (138), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| || ||| || || ||||| ||||| || Sbjct 665710 CCACCACGAAGGCGGAGCACCAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGCC 665769 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| || || || | ||| || || || |||||||| || || || ||||| Sbjct 665770 AGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATCAGCCGTTGCTGG---TCTGGA 665826 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||| || || || ||||||||||| ||||||||||| || |||| ||| |||| Sbjct 665827 GGGATGCCCTCCTTGTCCTGGATTTTGGCTTTCACGTTATCAATAGTATCAGAGCTC--- 665883 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || ||||| || || ||||| || ||||||||||| Sbjct 665884 TCCACCTCAAGGGTGATAGTTTTCCCCGTAAGTGTCTTCACAAATATCTGCAT 665936 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | || ||||| |||| ||| ||| || |||| || ||||||| Sbjct 530406 TCCTCCTCTGAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGGACGTTGTAGTCGGA 530347 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | ||| ||||| || |||||||| | ||| || || Sbjct 530346 AAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGG 530287 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTC 288422 ||| || ||||| ||||||||||| | || ||| | || || | || ||| || Sbjct 530286 GATCCCCTCTTTGTCCTGGATTTTGGTCTTAACGATCTCGATGGTGTC---CGAACTCTC 530230 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || |||||||||||||| |||||||| Sbjct 530229 CACCTCAAGGGTTATTGTCTTCCCAGTTAGAGTCTTGACGAAGATCTGCAT 530179 Score = 116 bits (128), Expect = 9e-21 Identities = 167/233 (72%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| |||||||| | || ||| || ||||| ||||| || || Sbjct 665938 CCACCCCTAAGACGAAGCACGAGATGTAGGGTAGATTCCTTCTGGATGTTATAATCAGCA 665997 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | |||||||| || || ||||| | || || || ||| Sbjct 665998 AGGGTACGGCCATCCTCAAGCTGTTTTCCAGCAAATATCAGCCTTTGCTGG---TCCGGG 666054 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || || ||||||||||| || |||||||| ||||||| || |||| Sbjct 666055 GGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCTATAGTGTCAGAGCTC--- 666111 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || || |||||||| ||||||||||| Sbjct 666112 TCCACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAATATCTGCAT 666164 Score = 111 bits (122), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | || |||||||| | ||| ||| |||||||| || ||||| | Sbjct 530862 TCCCCCTCTGAGGCGGAGAACGAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGA 530803 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || || || | || ||||| |||||||||| | ||| || || Sbjct 530802 GAGGGTTCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGG 530743 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||| || || || || || ||||| | ||| || ||||| || | || |||| || Sbjct 530742 GATGCCCTCCTTGTCTTGAATTTTGGATTTGACATTTTCGATCGTGTCAGAGCTC---TC 530686 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 530685 CACCTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 530635 Score = 111 bits (122), Expect = 4e-19 Identities = 166/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || |||| ||| || ||||| |||||||| || || Sbjct 666166 CCACCCCTGAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATATTATAATCAGCA 666225 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || || |||||||| | ||| ||| || ||| Sbjct 666226 AGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGA---TCCGGG 666282 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || ||||| ||||| || || || ||||| || || | || |||| Sbjct 666283 GGAATGCCCTCCTTATCTTGGATCTTAGCCTTTACGTTGTCGATGGTGTCAGAGCTC--- 666339 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 666340 TCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 666392 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| ||| || || ||||| || | |||||||| ||||| Sbjct 530597 TCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGTTTTCCGGCGAAA 530538 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || |||||| || ||||| ||||||||||| | || ||| || Sbjct 530537 ATCAACCTCTGCTGGTCCGGTGGGATGCCCTCTTTGTCCTGGATTTTTGACTTAACGATT 530478 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || ||||| || || ||||| || || || || ||| Sbjct 530477 TCGATGGTGTCGGAACTC---TCCACGTCGAGAGTAATGGTCTTGCCAGTGAGGGTTTTG 530421 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 530420 ACAAAGATCTGCATT 530406 Score = 104 bits (114), Expect = 6e-17 Identities = 166/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| || | ||| ||| || || || || || || Sbjct 665479 TGACCACCACGGAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCC 665538 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| || || || | |||||||| |||||||| || | ||| ||| ||| Sbjct 665539 GCAAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAAGATGAGCCTCTGCTGA---TCT 665595 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || ||||| ||||| || || || |||||||| || || | || | | Sbjct 665596 GGCGGTATCCCCTCTTTGTCCTGAATCTTTGCCTTCACGTTATCAATTGTGTC--TGAAC 665653 Query 288421 TCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||| || ||||| || || || || || ||||||||||| Sbjct 665654 TCTCCACCTCAAGAGTGATAGTTTTCCCAGTAAGTGTTTTCACAAATATCTGCAT 665708 >seq700 Length=617226 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| || | || || || |||||||||||||| || Sbjct 335095 CCACCTCGAAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCAGCT 335036 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || ||||| |||||||| || || || || ||| Sbjct 335035 AGAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGTTGCTGGTCCGGTGGA 334976 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||| || || || Sbjct 334975 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCGGATGACTCCACC 334916 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| || || || || ||||| |||||||| Sbjct 334915 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTTACGAAGATCTGCAT 334869 >seq2 Length=81761211 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || |||||||| || ||||| || || || | || || || || || Sbjct 19641501 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAA 19641560 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | || ||| |||||| || || || ||||||||||| || || ||||| Sbjct 19641561 ATCAACCTTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTGGCCTTAACGTTG 19641620 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| ||| || ||||| ||||||||||| || || |||||||| Sbjct 19641621 TCGATGGTATCAGAGCT---TTCCACCTCGAGGGTGATCGTCTTGCCAGTAAGAGTCTTC 19641677 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 19641678 ACGAAGATCTGCAT 19641691 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || || ||||| || ||||| || Sbjct 19640684 CCACCACGAAGGCGGAGGACTAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCC 19640743 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| ||||| || ||||| || | ||| || ||| Sbjct 19640744 AGAGTGCGCCCATCCTCAAGTTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 19640803 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || ||||| || ||||||||||| || || | || |||| || Sbjct 19640804 ATGCCCTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCCGAGCTC---TCA 19640860 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || |||||||| || |||||||| ||||| |||||||| Sbjct 19640861 ACCTCCAAGGTAATGGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 19640910 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || || || || || || || | || || || |||||| Sbjct 19640948 TCCTTCTGGATGTTGTAGTCTGCAAGGGTACGACCATCCTCCAGCTGCTTGCCGGCGAAG 19641007 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | || ||| ||||| || ||||||||||| ||||| || ||||||| Sbjct 19641008 ATCAACCTTTGCTGATCGGGAGGGATGCCCTCTTTATCCTGAATTTTGGCCTTCACGTCG 19641067 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| ||| || || || ||||| ||||| ||||| |||||||| Sbjct 19641068 TCGATGGTGTCTGAGCT---TTCAACCTCTAGGGTGATAGTCTTACCGGTGAGAGTCTTC 19641124 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 19641125 ACGAAGATCTGCAT 19641138 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || || || || || || || || ||||| || || Sbjct 19641155 AGGACAAGATGGAGAGTGGACTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCC 19641214 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||| | ||||||| ||||| || ||||| ||| Sbjct 19641215 TCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGTTGA---TCTGGAGGAATGCCTTCCTTA 19641271 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || |||||||| || || | || ||| || || || ||||| Sbjct 19641272 TCCTGGATCTTTGCATTCACGTTGTCGATGGTGTCAGAACTTTCCACCTCAAGGGTGATA 19641331 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||| ||| || || || | ||| Sbjct 19641332 GTCTTGCCGGTAAGAGACTTAACAAAGATTTTCAT 19641366 >seq202 Length=4793652 Score = 102 bits (112), Expect = 2e-16 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| || ||| || || ||||| |||| Sbjct 4329351 CATG-CCACCACGAAGACGGAGCACAAGATGAAGAGTAGATTCCTTCTGAATATTGTAGT 4329293 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || || || || || ||||| || Sbjct 4329292 CCGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAAATGAGGCGCTGCTGGTCCG 4329233 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCG 288418 ||| || || || ||||| |||||||| || || || || || |||| ||| ||| Sbjct 4329232 GTGGAATCCCCTCCTTATCTTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTC- 4329174 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| || || || || || || ||||||||||| Sbjct 4329173 --TCAACTTCAAGTGTGATTGTCTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 4329121 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || |||||||| || | ||||| || || || | ||||| || || || Sbjct 4082848 TCTTTCTGAATGTTATAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGTTTCCCAGCAAAA 4082789 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||||||||| ||||||||||| || || || ||||| Sbjct 4082788 ATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTG 4082729 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || || || || ||||| || || || ||||| || Sbjct 4082728 TCAATGGTATCAGAACTTTCGACCTCAAGTGTAATTGTCTTGCCTGTAAGGGTCTTAACA 4082669 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4082668 AAAATCTGCAT 4082658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178300398577952