Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq293 136 9e-27 seq36 131 4e-25 >seq293 Length=413263 Score = 136 bits (150), Expect = 9e-27 Identities = 305/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 |||||||||||||||| | |||| | | |||||| ||||||||| | || ||||| | Sbjct 226932 AATCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCA 226991 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 243403 | |||||||||||||| ||||| ||| ||| ||||||| || ||| | | |||| Sbjct 226992 GCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCTA 227051 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA 243463 ||||| ||||| ||| |||||||| || ||| | || | | ||| ||||| | Sbjct 227052 ACGAGCTCATCTCTCGTGACGAGGGACTCCACTGCGACTTTGCTTGCCTTCTGTAT---A 227108 Query 243464 AGCTCCAG---AACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTG 243520 || | | |||||| | | || | ||| | || | | || || || | Sbjct 227109 GCCTTCTGATCAACAAGATTTCGGAGGAGAGGGTTCGGGAGATTGTTGCCGATGCTGTAG 227168 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTG 243580 | | ||||||||||| |||| || || | || ||| ||| | || |||||| | | Sbjct 227169 ATATTGAAAAGGAATTTGTTTGTGATGCACTCCCCTGCGCTCTTGTGGGGATGAACGCAG 227228 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 | || ||| | | || || |||||||| || || || || | || || || |||| Sbjct 227229 ATCTAATGAGCCGCTATATTGAATTCGTGGCAGATCGGCTTGTTGGAGCTCTGGGCTATG 227288 Query 243641 AGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGA 243700 | || |||| ||| || |||| | ||||| ||||| ||||| || || | Sbjct 227289 ACAAGATGTATGGTGTATCGAATCCATTTGATTGGATGGAACTCATCTCGCTGCAGGGTA 227348 Query 243701 AAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | ||||| ||||| || ||| | || | || ||||| Sbjct 227349 AGACTAATTTCTTTGAGAAGAGGGTTGGGGAGTATCA 227385 >seq36 Length=6822877 Score = 131 bits (144), Expect = 4e-25 Identities = 286/425 (67%), Gaps = 15/425 (4%) Strand=Plus/Minus Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375 |||||||| || || | || || || ||||||||||||||||| |||||| ||| | | Sbjct 1783736 TGCGTTGAGGGCATCTTCTTCTCTGGTAGTTTCTGCGCCATCTTCTGGCTGAAGAAGAGA 1783677 Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 || | |||||||| ||| | | || |||||| | || ||| || |||||||| ||| Sbjct 1783676 GGGCTAATGCCTGGTCTCACTTTTTCCAACGAGCTTATTTCTCGTGATGAGGGCCTGCAC 1783617 Query 243436 CAACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGT 243494 | || | ||| || |||| |||| | || ||||| | || | ||| Sbjct 1783616 TGTGACTTTGCGTGT-CTGCTGTACAGTCTGCTCAATAATAAGCTCTCTGAGGATAGGGT 1783558 Query 243495 CAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCC 243554 | | | || | | || || || || | || | ||| || |||| |||||| || Sbjct 1783557 TAGAGAGATTGTTGCTGATGCTGTAGATATAGAGAGGGAGTTTGTTTGTGACGCTCCTC- 1783499 Query 243555 ATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGA 243614 || | || |||||| |||| || ||| | |||||||| || || || ||||| Sbjct 1783498 --------TTGTGGGGATGAACGCTGATCTAATGAGTCAGTACATAGAGTTTGTTGCCGA 1783447 Query 243615 CCGCATTTTCATCGCGCTT--GGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 || | ||| | | |||| ||||| | || ||||| | ||| || |||| | Sbjct 1783446 TCG--TCTTCTTGGTGCTTTAGGTTACGGTAAGATGTACGAGGTATCGAATCCATTTGAC 1783389 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGAT 243732 | |||||||| ||||| ||||||||||| || ||||||||||| || | ||| |||| Sbjct 1783388 TGGATGGAGCTTATTTCTCTTCAAGGGAAGACAAACTTCTTCGAGAAAAGGGTCGGTGAA 1783329 Query 243733 TATCA 243737 || || Sbjct 1783328 TACCA 1783324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101614119850400