Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq640 131 2e-25 seq876 100 3e-16 seq202 86.0 7e-12 seq2 84.2 2e-11 >seq640 Length=221176 Score = 131 bits (144), Expect = 2e-25 Identities = 152/201 (76%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||| || || || || |||| || |||||||| ||||| || Sbjct 161981 TCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCAGCAAAG 162040 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||| || | ||| | || |||||||||| ||| | || | || | ||| Sbjct 162041 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCC-TGAATCTTCGCTTTAACGTT 162099 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || ||||| |||| ||||| || || |||||||| || || || Sbjct 162100 GTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTGAC 162159 Query 42197 AAAGATTTGCAT-TTTCACGC 42216 ||||||||||| ||||| || Sbjct 162160 GAAGATTTGCATCTTTCAGGC 162180 >seq876 Length=1913211 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||||||||| || ||||| || || | || || || ||||| ||||| || Sbjct 665746 TCCTTCTGAATATTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAG 665805 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || |||||||| | || | || |||||||||| |||||| ||| | | Sbjct 665806 ATCAGCCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCTTTCACGTTA 665865 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | || || |||| ||||| || | ||||| ||||| ||||| || ||||| Sbjct 665866 TCAATAGTATCAGAGCTC---TCCACCTCAAGGGTGATAGTTTTCCCCGTAAGTGTCTTC 665922 Query 42195 ACAAAGATTTGCATTTTCACGCCGAATACAATGCACG 42231 ||||| || |||| | ||| || || || | ||||| Sbjct 665923 ACAAATATCTGCA-TACCACCCCTAAGACGAAGCACG 665958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || || || || || |||| || ||||||||||| ||||| Sbjct 531053 TCCTTCTGAATGTTGTAGTCGGCAAGGGTACGAGCGTCCTCAAGCTGCTTACCGGCGAAG 530994 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | |||||||| | || | | |||||||||| ||| || || | || Sbjct 530993 ATCAACCTTTGCTGGTCCGGTGAAAGTCCCTCCTTGTCCTGGATCTTCGACTTCACTATC 530934 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | || ||||| |||| ||||| |||| || || || ||||| || || || || Sbjct 530933 TCGACGGTGTCAGAGCTC---TCCACCTCGAGGGTAATAGTCTTGCCAGTGAGGGTTTTG 530877 Query 42195 ACAAAGATTTGCATT 42209 ||||| || |||||| Sbjct 530876 ACAAAAATCTGCATT 530862 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||||||||| |||||||| || || || | || || || ||||| || || || Sbjct 666201 CTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCAAA 666260 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | || |||||| || ||| || || | ||| Sbjct 666261 GATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTTA-CGT 666319 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| |||| |||||||| ||||| || || |||| Sbjct 666320 TGTCGATGGTGTCAGAGCTC---TCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCT 666376 Query 42193 TTACAAAGATTTGCAT 42208 | || || || ||||| Sbjct 666377 TGACGAAAATCTGCAT 666392 >seq202 Length=4793652 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||||||||| || || || || || | || || |||||||||||||| || Sbjct 4329311 TCCTTCTGAATATTGTAGTCCGCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAA 4329252 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||| ||||||||||| | ||| | | |||||| || |||||| Sbjct 4329251 ATGAGGCGCTGCTGGTCCGGTGGAATCCCCTCCTTATCTTGGATTTT 4329205 >seq2 Length=81761211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||| || || || | || || |||||||| ||||| || Sbjct 19641175 CTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAA 19641234 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||| ||| || || | || | || ||||| ||| ||| ||| || | ||| Sbjct 19641235 GATCAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTTTGCATTCA-CGT 19641293 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| |||||| || | ||||| || ||||| || || | ||| | Sbjct 19641294 TGTCGATGGTGTCAGAACTTTCCACCTCAAGGGTGATAGTCTTGCCGGTAAGAGACTTAA 19641353 Query 42196 CAAAGATTTGCAT 42208 ||||||||| ||| Sbjct 19641354 CAAAGATTTTCAT 19641366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542604510306560