Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq202 122 9e-23 seq876 109 5e-19 seq640 107 2e-18 seq2 95.1 1e-14 >seq202 Length=4793652 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || |||||||||||||| || | |||||| | || ||||||||||| || Sbjct 4328994 GTGGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCA 4328935 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || | |||||||| ||||| || |||||||| || ||||| || ||| Sbjct 4328934 GCAAAGATAAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGTATCTTAGCCTTG 4328875 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| | || ||||| | ||| | ||||||||||| | || Sbjct 4328874 ACATTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTGATTGTCTTGCCGGTAAGCGTC 4328815 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 4328814 TTCACGAAAATCTGCAT 4328798 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| || ||||| || ||||| ||||| || || | |||||| | || Sbjct 4329332 AGCACAAGATGAAGAGTAGATTCCTTCTGAATATTGTAGTCCGCAAGGGTGCGACCATCC 4329273 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || ||| ||||||| ||||||||||| || ||||| || || || ||| Sbjct 4329272 TCAAGCTGCTTACCAGCAAAAATGAGGCGCTGCTGGTCCGGTGGAATCCCCTCCTTATCT 4329213 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | || || | || ||||| | || | ||| Sbjct 4329212 TGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTCTCAACTTCAAGTGTGATTGTC 4329153 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || || || ||||| Sbjct 4329152 TTTCCAGTGAGGGTTTTCACAAATATCTGCAT 4329121 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||||||||| || ||||| ||||| || | ||||| | || Sbjct 4329560 AGAACAAGGTGAAGTGTCGATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGACCATCC 4329501 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||||||| | ||||| |||||||| || |||||||| || || || || Sbjct 4329500 TCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATCC 4329441 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||||| | || || || | || | |||| Sbjct 4329440 TGAATCTTCGCCTTCACGTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTC 4329381 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| || || || |||||||| Sbjct 4329380 TTTCCAGTAAGAGTCTTCACAAAGATTTGCAT 4329349 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || || || || |||||||| |||||||| | ||||| | || || Sbjct 4328779 CACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCTGCAAGTGTGCGGCCATCCTC 4328720 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||||||| || ||| |||| | || ||||||||| |||||||| |||||||| || || Sbjct 4328719 AAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTG 4328660 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || | || ||||| | ||| | ||||| Sbjct 4328659 GATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCAACTTCAAGAGTGATCGTCTT 4328600 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || || ||||| ||||| Sbjct 4328599 ACCAGTTAGGGTCTTCACAAAAATCTGCAT 4328570 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || |||||||| || ||||||| ||||| |||| Sbjct 4328553 AGCACAAGGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGTGTGCGGCCGTCC 4328494 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || ||| | || | || ||| ||||| ||||| || ||||| || ||| Sbjct 4328493 TCAAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCCGGAGGGATGCCTTCCTTGTCT 4328434 Query 64352 TGTATTTT 64359 || || || Sbjct 4328433 TGGATCTT 4328426 >seq876 Length=1913211 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||| || ||||||||||| || || | ||| || ||||| Sbjct 531074 AGAACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGAGCGTCC 531015 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| ||||| | || | || |||||||| || | || ||| || || || Sbjct 531014 TCAAGCTGCTTACCGGCGAAGATCAACCTTTGCTGGTCCGGTGAAAGTCCCTCCTTGTCC 530955 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || | ||| || || ||| | ||||| || | || | ||| Sbjct 530954 TGGATCTTCGACTTCACTATCTCGACGGTGTCAGAGCTCTCCACCTCGAGGGTAATAGTC 530895 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | ||||| || ||||| |||||| Sbjct 530894 TTGCCAGTGAGGGTTTTGACAAAAATCTGCATT 530862 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || |||||||| || ||||| || | ||| || | || Sbjct 666181 AGAACAAGGTGAAGGGTGGACTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCC 666240 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||||||| | || |||| |||||| || || ||||| || || || ||| Sbjct 666241 TCGAGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCT 666300 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| || | || ||| | ||||| || | || | |||| Sbjct 666301 TGGATCTTAGCCTTTACGTTGTCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTC 666360 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || |||||||| ||||| Sbjct 666361 TTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 666392 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| ||||| |||||||| || | || ||| || | || Sbjct 530846 AGAACGAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGGGTTCGACCATCC 530787 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | || | || ||||||||| || || || || || || ||| Sbjct 530786 TCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCT 530727 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| || ||| || | || ||| | ||||| || | || | |||| Sbjct 530726 TGAATTTTGGATTTGACATTTTCGATCGTGTCAGAGCTCTCCACCTCAAGCGTGATGGTC 530667 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || || || || ||||| Sbjct 530666 TTGCCGGTGAGGGTCTTCACAAATATCTGCAT 530635 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| || |||||||| || | || || || |||| Sbjct 530163 AAGAACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCGTC 530104 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||| ||||| || | || |||| |||||| || || || |||||||| || || Sbjct 530103 CTCAAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGATCCGGTGGGATTCCTTCCTTATC 530044 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| || || | ||||| | ||||| || | |||| || Sbjct 530043 CTGGATTTTAGACTTAACGTTTTCAATCGTATCGGAGCTCTCCACGTCAAGGGTTATTGT 529984 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAATAAT 64452 ||||||||| | || || || || || ||||| | ||| ||| Sbjct 529983 CTTGCCGGTGAGGGTCTTGACAAATATCTGCATCTGTAACAAT 529941 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || |||||||||||||| || | |||||| | || |||||||| || || Sbjct 665512 GTGGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGTTTTCCA 665571 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||| || || || || || ||||| || || || ||| ||| Sbjct 665572 GCGAAGATGAGCCTCTGCTGATCTGGCGGTATCCCCTCTTTGTCCTGAATCTTTGCCTTC 665631 Query 64367 AC 64368 || Sbjct 665632 AC 665633 >seq640 Length=221176 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||||||| || ||||| |||||||| |||| ||| || |||| Sbjct 161960 AGAACGAGGTGAAGCGTCGATTCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCC 162019 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || ||| | || | |||||||| || || ||||| || || || || Sbjct 162020 TCAAGCTGCTTCCCAGCAAAGATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCC 162079 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || || | || || || ||||| || | || | || Sbjct 162080 TG-AATCTTCGCTTTAACGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGT 162138 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | ||||| ||||| |||||||| || Sbjct 162139 CTTCCCCGTTAGGGTTTTGACGAAGATTTGCATCTT 162174 >seq2 Length=81761211 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || || | |||||| | || |||||||||||||| Sbjct 19641495 GTTGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGCTTGCCA 19641554 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || ||||| || || || || || || || || || ||||| ||| Sbjct 19641555 GCAAAAATCAACCTTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTGGCCTTA 19641614 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | ||||| || | || | |||||||| || | ||| Sbjct 19641615 ACGTTGTCGATGGTATCAGAGCTTTCCACCTCGAGGGTGATCGTCTTGCCAGTAAGAGTC 19641674 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 19641675 TTCACGAAGATCTGCATCTT 19641694 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| ||||| | ||| || | || || |||||||||||| Sbjct 19640942 GTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTACGACCATCCTCCAGCTGCTTGCCG 19641001 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||| |||||||| || || ||||| || || ||||| ||| Sbjct 19641002 GCGAAGATCAACCTTTGCTGATCGGGAGGGATGCCCTCTTTATCCTGAATTTTGGCCTTC 19641061 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || | || | || || | || || |||| || | ||||| ||||| | ||| Sbjct 19641062 ACGTCGTCGATGGTGTCTGAGCTTTCAACCTCTAGGGTGATAGTCTTACCGGTGAGAGTC 19641121 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 19641122 TTCACGAAGATCTGCAT 19641138 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || ||||||||||| || | |||||| | || Sbjct 19641155 AGGACAAGATGGAGAGTGGACTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCC 19641214 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || | ||| || || |||||||| ||||| || || Sbjct 19641215 TCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTATCC 19641274 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| || || || | || ||| ||||| || | || | ||| Sbjct 19641275 TGGATCTTTGCATTCACGTTGTCGATGGTGTCAGAACTTTCCACCTCAAGGGTGATAGTC 19641334 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || || || |||| ||| Sbjct 19641335 TTGCCGGTAAGAGACTTAACAAAGATTTTCAT 19641366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499085297752960