Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq36 111 2e-19 seq293 107 2e-18 seq2 96.9 4e-15 >seq36 Length=6822877 Score = 111 bits (122), Expect = 2e-19 Identities = 342/522 (66%), Gaps = 14/522 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| ||||| || || || || || || || ||||| Sbjct 1783606 GCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAAAAGTGAGACCA 1783665 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || | |||||||| |||||| || || || || |||||||||||||| Sbjct 1783666 GGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAGAAACTACCAGAGAAGAAGATG 1783725 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || || || |||| | ||||| ||||| || ||| | || | | Sbjct 1783726 CCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGAATCGGA---GGCGTCGATC 1783782 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 || | |||||||||||||| ||| || || ||||||| ||| || | ||| Sbjct 1783783 CAGCGGAGAGCCCACTGTGCCTTGCGGGCGACGCAGGGAACGGTCTCGATAGCATGGAAG 1783842 Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 127819 || | | || |||| | ||||||||||| | || | || || | ||| Sbjct 1783843 AGGTGCGATTTCTCTGCGGAGTCTTTGATGTAGGTTTCGAGAAGCAGGCTGTACATCTCG 1783902 Query 127820 CCGTGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 127877 ||||| |||| ||||| |||| | | ||||||| |||||| || | || Sbjct 1783903 GAGTGGATGTTTTC--GATGGCGATCTGAAATCCATAGAAAGCGCGCGCCTCCGGGAGCT 1783960 Query 127878 GTACCTCATCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935 ||||||| | ||| || | | || ||||| | ||| ||||| ||||| | || Sbjct 1783961 GTACCTC--CCGCATGAAGCGGCCAGCGAGGTTCTCTAGAACGATTCCGTCGGAAGCGGC 1784018 Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGG--TC-TTCCA 127992 || || || || | | ||| ||| | | |||| | | | |||| || ||||| Sbjct 1784019 GAAGAAAGCGAGAACGTGGGTTACGAAATGCCGTTCGTCGGAGGTGAGGGATTCATTCCA 1784078 Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || | |||||| | || ||||| || || || || ||||| Sbjct 1784079 GTGGCGGAGATCTTGGGACAGATCAACTTCTTCTGCTGTCCA 1784120 >seq293 Length=413263 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || |||||| ||||||||||| |||||||| || || || || ||||| Sbjct 227095 AGCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACC 227036 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| | ||| |||||||| | |||||| || || || || ||| |||||||| || Sbjct 227035 TGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAAT 226976 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || || ||||| || || | | ||||| ||||| || Sbjct 226975 ACCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAATGA 226934 >seq2 Length=81761211 Score = 96.9 bits (106), Expect = 4e-15 Identities = 225/334 (67%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 || ||||| || |||||| || || || | || | ||| || || | || || Sbjct 31018738 TCCAGGATGTCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAA 31018797 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| |||||||| || || || | |||||||| | |||||||||| | | Sbjct 31018798 CCATCCATTTCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCA 31018857 Query 12855 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT 12914 ||||| | |||||| | || || || |||||||| |||| ||| || ||||| ||| Sbjct 31018858 ATACCCGTTCCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAAGGT 31018917 Query 12915 TGATTTTCACGGGCAA-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 12973 ||| || || ||| ||| | ||| || || | ||| || ||||| ||||| Sbjct 31018918 GCATTCTCTTTAGCCTTCTTGAAA-AGATCACGAACCCGTGAGGCGCCAACACCAACAAA 31018976 Query 12974 CATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGA 13032 |||||||||||| | | | | | || | || ||||| || | |||||| || | Sbjct 31018977 CATCTCCACAAACTCAGATCCTG-AGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAA 31019035 Query 13033 TGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 |||| ||| || || ||||| || || || || Sbjct 31019036 TGGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 31019069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612820194637440