Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq700 131 2e-25 seq640 116 4e-21 seq876 113 5e-20 seq2 86.0 7e-12 >seq700 Length=617226 Score = 131 bits (144), Expect = 2e-25 Identities = 148/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||| ||||| | ||||||||| | || ||||||||||| |||||||| Sbjct 335060 CTCCTTCTGGATATTATAGTCAGCTAGAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAA 335001 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| |||||||| | || | || ||||||||| |||||| ||| | ||| Sbjct 335000 GATAAGGCGTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT-AACGT 334942 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 334941 TGTCAATGGTGTCGGATGACTCCACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTTA 334882 Query 46581 CAAAGATTTGCATTTT 46596 | ||||| ||||| || Sbjct 334881 CGAAGATCTGCATCTT 334866 >seq640 Length=221176 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||| |||| || || || |||| || |||||||| || || || Sbjct 161981 TCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCAGCAAAG 162040 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || ||||||||||| || | || | || |||||||||| |||||| ||| | ||| Sbjct 162041 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTC-GCTTTAACGTT 162099 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 162100 GTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTGAC 162159 Query 46582 AAAGATTTGCATTTTGCA 46599 ||||||||||| || || Sbjct 162160 GAAGATTTGCATCTTTCA 162177 >seq876 Length=1913211 Score = 113 bits (124), Expect = 5e-20 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || || || || | || ||||||||||| |||||||| Sbjct 530825 TCCTTTTGGATGTTGTAGTCAGAGAGGGTTCGACCATCCTCGAGCTGCTTTCCGGCGAAG 530766 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || ||||||||| || || |||| | Sbjct 530765 ATCAACCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGAATTTTGGATTTGACATTT 530706 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | |||||| |||| ||||| || | ||||||||| ||||| || || || || Sbjct 530705 TCGATCGTGTCAGAGCTC---TCCACCTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTC 530649 Query 46580 ACAAAGATTTGCAT 46593 ||||| || ||||| Sbjct 530648 ACAAATATCTGCAT 530635 Score = 111 bits (122), Expect = 2e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| || || || |||| |||||||| || |||||||| Sbjct 530598 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGTTTTCCGGCGAA 530539 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||| |||||| ||| || ||| | | Sbjct 530538 AATCAACCTCTGCTGGTCCGGTGGGATGCCCTCTTTGTCCTGGATTTTTGACTTAACGAT 530479 Query 46522 CGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| ||||| || | || ||||| ||||| || || ||||| Sbjct 530478 TTCGATGGTGTCGGAACTC---TCCACGTCGAGAGTAATGGTCTTGCCAGTGAGGGTTTT 530422 Query 46579 AACAAAGATTTGCATT 46594 |||||||| |||||| Sbjct 530421 GACAAAGATCTGCATT 530406 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | ||| || || | ||| ||||| ||||||||||| || | Sbjct 666394 CCACCCCTAAGACGAAGCACAAGGTGTAGGGTAGATTCCTTCTGGATATTGTAATCAGCA 666453 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || |||||||| ||||| || |||| | ||| || || | ||| Sbjct 666454 AGGGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAGCCTCTGTTGATCCGGCGGG 666513 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | || |||||||||| ||||| ||| | ||| | | | || || ||| || Sbjct 666514 ATGCCCTCCTTGTCCTGTATCTTAGCCTTCA-CGTTGTCGATGGTATCAGAACTC---TC 666569 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 666570 CACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCAT 666620 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || || || | || ||||| |||| ||||||||||| Sbjct 530405 CCTCCTCTGAGACGGAGAACGAGGTGAAGGGTGGATTCCTTCTGGACGTTGTAGTCGGAA 530346 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || || ||||| ||||| || |||| | ||||||||| | || Sbjct 530345 AGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 530286 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCC 46543 | | ||| |||||| ||| || |||| | || | | ||||| ||| ||| Sbjct 530285 ATCCCCTCTTTGTCCTGGATTTTGGTCTTAACGATCTCGATGGTGTC---CGAACTCTCC 530229 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || || || || || || || || || || ||||| ||||| Sbjct 530228 ACCTCAAGGGTTATTGTCTTCCCAGTTAGAGTCTTGACGAAGATCTGCAT 530179 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| ||||| || || | || || || | || ||||| ||||||||||| || Sbjct 666201 CTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCAAA 666260 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||| || | || | || |||||| || |||||| ||| | ||| Sbjct 666261 GATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTTA-CGT 666319 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| ||||| || | |||||||| ||||| || || || | Sbjct 666320 TGTCGATGGTGTCAGAGCTC---TCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCT 666376 Query 46578 TAACAAAGATTTGCAT 46593 | || || || ||||| Sbjct 666377 TGACGAAAATCTGCAT 666392 >seq2 Length=81761211 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | || || || | ||| |||||| ||||| |||||||| | Sbjct 19640912 CCTCCCCTCAGACGTAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCA 19640971 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||||||||| ||||| | ||||| |||| || Sbjct 19640972 AGGGTACGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGATCGGGAGGG 19641031 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | || ||| || ||| || || ||| | ||||| | | ||||| ||| ||| Sbjct 19641032 ATGCCCTCTTTATCCTGAATTTTGGCCTTCA-CGTCGTCGATGGTGTCTGAGCT---TTC 19641087 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || || || || || || || || ||||| ||||| Sbjct 19641088 AACCTCTAGGGTGATAGTCTTACCGGTGAGAGTCTTCACGAAGATCTGCAT 19641138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||||| || ||||| | || || ||||||||||| || || Sbjct 19641500 CTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAA 19641559 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||| || | || | | |||||||||| ||| || ||| | ||| Sbjct 19641560 AATCAACCTTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTGGCCTT-AACGT 19641618 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | || || ||| |||||| || | ||||| || ||||| || || || | Sbjct 19641619 TGTCGATGGTATCAGAGCT---TTCCACCTCGAGGGTGATCGTCTTGCCAGTAAGAGTCT 19641675 Query 46578 TAACAAAGATTTGCATTTTG 46597 | || ||||| ||||| ||| Sbjct 19641676 TCACGAAGATCTGCATCTTG 19641695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564605446039680