Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq293 172 5e-38 seq876 136 4e-27 seq700 102 8e-17 seq2 93.3 4e-14 seq921 84.2 2e-11 >seq293 Length=413263 Score = 172 bits (190), Expect = 5e-38 Identities = 377/558 (68%), Gaps = 15/558 (3%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||||||||||||||| || | |||||||| | || ||||| ||||| ||||| | Sbjct 227098 GCAAGCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAG 227039 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| | ||||| || |||||||| || |||||| ||| ||||| || ||||| Sbjct 227038 ACCTGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAA 226979 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | || |||||| ||| ||||| | | ||||| | || | ||| | | | Sbjct 226978 AATACCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAA---TGATTCAGAGGCGTC 226922 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 ||||||||||| ||||| | ||||| |||||| || | |||||||||||| Sbjct 226921 AATCCAGCGCAGTGCCCACTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGCGCG 226862 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATA 133190 || | | | ||| ||| | ||| | | |||||| |||| ||| ||| Sbjct 226861 AAAAAGATTGGATTT---TTCGGTGGAGTCCTTGATGTAGGTCTCGAGGAGAAGACTATA 226805 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCACCGCGCCTCGA 133249 ||| || ||||| | ||| || |||||||| || ||||| || ||||| |||||||| Sbjct 226804 CATCTCGGAGTGAATGTTTTCGATGGCGATCTGGAAGCCATAGAAAGC-GCGCGCCTCCG 226746 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | || || ||| | ||| || || | || || || ||||| || || | Sbjct 226745 GAAGTTGAACCTCTCGCATGAAGCGTCCGGCGAGGTTCTCCAGCACGATACCATCAGAAG 226686 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCT 133366 ||||||| |||||||| |||| |||| || |||||||||| | | | | | | Sbjct 226685 CGGCGAAGAAGGCCAGGACGTAGGTGATAAAGTGGCGCTCGTCAGAGGTGAGGGTGTGAT 226626 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||| | || ||| | || || || ||||| || | ||||| || || ||||| | Sbjct 226625 CCCATTGCCGAACGTCTTGTGAGAGATCGACCTCTTCCGCAGTCCAGAAAGAGGCCTCTG 226566 Query 133427 CTTTTTTGTACATACTCC 133444 |||| |||||||| |||| Sbjct 226565 CTTTCTTGTACAT-CTCC 226549 >seq876 Length=1913211 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| ||||| ||||| ||||| || ||||||| ||| | Sbjct 530406 AATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATTACTCTCGACGTGGAGAGTTC 530465 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | ||| |||| |||||||| ||||||||||| || || | ||||| Sbjct 530466 CGACACCATCGAAATCGTTAAGTCAAAAATCCAGGACAAAGAGGGCATCCCACCGGACCA 530525 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| || |||||||| || |||| || |||||| ||||||||| Sbjct 530526 GCAGAGGTTGATTTTCGCCGGAAAACAGCTCGAGGACGGCCGAACCCTCTCCGACTACAA 530585 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || |||| || || | || || ||| | || || || Sbjct 530586 CATCCAGAAAGAGTCGACCCTCCACCTTGTTCTTCGTCTTAGGGGAGG 530633 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || ||||| ||||| |||||||| | || || ||| | | Sbjct 530635 ATGCAGATATTTGTGAAGACCCTCACCGGCAAGACCATCACGCTTGAGGTGGAGAGCTCT 530694 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | ||| ||||| | ||||| ||||| || ||| | ||||| Sbjct 530695 GACACGATCGAAAATGTCAAATCCAAAATTCAAGACAAGGAGGGCATCCCCCCGGACCAG 530754 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || ||||| || || | || |||||| ||||||||| Sbjct 530755 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGAACCCTCTCTGACTACAAC 530814 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||| | || || || | ||||| || Sbjct 530815 ATCCAAAAGGAATCCACCCTCCATCTCGTTCTCCGCCTCAGAGGGGG 530861 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || ||||| ||||| || || ||| | ||||| ||| | || Sbjct 529951 ATGCAGATATTTGTCAAGACCCTCACCGGCAAGACAATAACCCTTGACGTGGAGAGCTCC 530010 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| |||| ||||||| || || || ||||| || | || || Sbjct 530011 GATACGATTGAAAACG-TTAAGTCTAAAATCCAGGATAAGGAAGGAATCCCACCGGATCA 530069 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||||||||| || |||| || || ||| ||||||||| Sbjct 530070 GCAGAGGCTGATCTTCGCTGGCAAACAGCTTGAGGACGGCCGAACGCTCTCCGACTACAA 530129 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || || || | || || ||| | || || || Sbjct 530130 CATCCAGAAAGAGTCTACCCTCCACCTTGTTCTTCGTCTTAGGGGAGG 530177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || || ||| | || || ||| | Sbjct 530179 ATGCAGATCTTCGTCAAGACTCTAACTGGGAAGACAATAACCCTTGAGGTGGAGAGTTCG 530238 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| ||||||||||| || || | ||||| Sbjct 530239 GACACCATCGAGATCGTTAAGACCAAAATCCAGGACAAAGAGGGGATCCCTCCGGACCAG 530298 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || |||| |||||||| |||||||||| Sbjct 530299 CAGAGGCTGATCTTTGCCGGAAAGCAACTTGAGGACGGTCGCACCCTTTCCGACTACAAC 530358 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| |||||| | || || || | || || ||| | ||||| || Sbjct 530359 GTCCAGAAGGAATCCACCCTTCACCTCGTTCTCCGTCTCAGAGGAGG 530405 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| ||||| ||||| || || ||| |||| || ||| | | Sbjct 530862 AATGCAGATTTTTGTCAAAACCCTCACTGGCAAGACTATTACCCTCGAGGTGGAGAGCTC 530921 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| ||| | | | || || |||| ||||| |||||| || | | ||||| Sbjct 530922 TGACACCGTCGAGATAGTGAAGTCGAAGATCCAGGACAAGGAGGGACTTTCACCGGACCA 530981 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || || ||||| || |||| || ||||| ||||||||| Sbjct 530982 GCAAAGGTTGATCTTCGCCGGTAAGCAGCTTGAGGACGCTCGTACCCTTGCCGACTACAA 531041 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || |||||| | || || || Sbjct 531042 CATTCAGAAGGAATCTACCCTTCA 531065 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| || || || ||||| ||||| | || || ||| | Sbjct 665708 ATGCAGATATTTGTGAAAACACTTACTGGGAAAACTATCACTCTTGAGGTGGAGAGTTCA 665649 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| || | ||||||||||| || || | || || Sbjct 665648 GACACAATTGATAACG-TGAAGGCAAAGATTCAGGACAAAGAGGGGATACCGCCAGATCA 665590 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| || |||||||| || || | |||||||| || ||||| Sbjct 665589 GCAGAGGCTCATCTTCGCTGGAAAACAGCTTGAGGATGGCCGCACCCTTGCGGATTACAA 665530 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || || | || || ||| Sbjct 665529 CATTCAGAAGGAATCCACCCTCCACCTCGTCCTCCGT 665493 >seq700 Length=617226 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||||||||| || ||||| || || |||||| | || || ||| | Sbjct 334865 AAAGATGCAGATCTTCGTAAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTC 334924 Query 38300 CACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||||| | || |||| |||| | || |||| ||||| || || ||||| | | Sbjct 334925 ATCCGACACCATTGACAACG-TTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGG 334983 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| || || || || | ||| || || ||||| || || | ||||| || |||| Sbjct 334984 ACCAGCAACGCCTTATCTTCGCCGGAAAGCAGCTCGAGGATGGACGCACTCTAGCTGACT 335043 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCA 38446 | || ||||| ||||| |||| || || Sbjct 335044 ATAATATCCAGAAGGAGTCGACCCTCCA 335071 >seq2 Length=81761211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| || |||||| |||| || || | Sbjct 19641694 AAGATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACGATCACCCTCGAGGTGGAAAGC 19641635 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| |||| | ||||||| ||||| ||||| || || | || Sbjct 19641634 TCTGATACCATCGACAACG-TTAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCGGA 19641576 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | |||| || ||||| ||||| || || | |||||||| |||||| Sbjct 19641575 TCAGCAAAGGTTGATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCCGACTA 19641516 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||| || ||||| | || ||| || Sbjct 19641515 CAACATTCAGAAGGAGTCAACCCTGAAT 19641488 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| | || || || | | Sbjct 19641138 ATGCAGATCTTCGTGAAGACTCTCACCGGTAAGACTATCACCCTAGAGGTTGAAAGCTCA 19641079 Query 38304 GACAGCGTGCAA-ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||| | || | ||||| | || |||||||| || || |||| || Sbjct 19641078 GACACCATCGACGACG-TGAAGGCCAAAATTCAGGATAAAGAGGGCATCCCTCCCGATCA 19641020 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| ||||| |||||||| || | || ||||| |||||||| Sbjct 19641019 GCAAAGGTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGTACCCTTGCAGACTACAA 19640960 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || | || || ||| |||| || || Sbjct 19640959 CATCCAGAAGGAGTCCACACTCCACCTTGTTCTACGTCTGAGGGGAGG 19640912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||| ||| | || || ||| | | Sbjct 19640910 ATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACCATTACCTTGGAGGTTGAGAGCTCG 19640851 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| ||||| || || | ||||| Sbjct 19640850 GACACCATCGATAACG-TGAAAGCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCA 19640792 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || || || || || | |||||| || |||||||| Sbjct 19640791 GCAGAGGCTTATCTTTGCCGGAAAGCAACTTGAGGATGGGCGCACTCTGGCGGACTACAA 19640732 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 19640731 CATCCAGAAGGA 19640720 >seq921 Length=516242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| || |||||| |||| || || | Sbjct 187297 AAGATGCAGATCTTCGTGAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAAAGC 187238 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| |||| | ||||||| | ||| || | || | | || Sbjct 187237 TCTGATACCATCGATAACG-TTAAGGCTAAAATCCAGGGCAAGGACGATATCTCACCGGA 187179 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | |||| || ||||||||||| || || | | ||||| |||||| Sbjct 187178 TCAGCAAAGGTTGATTTTTGCTGGCAAACAGCTTGAGGATGGTCATACCCTTGCCGACTA 187119 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||||| | || || ||| | || || ||| Sbjct 187118 CAACATTCAAAAGGAGTCAACCCTACATCTTGTTCTCCGT 187079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612706498560