Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 183 4e-41 seq91 100 3e-16 seq293 98.7 1e-15 seq36 96.9 4e-15 seq403 87.8 2e-12 >seq2 Length=81761211 Score = 183 bits (202), Expect = 4e-41 Identities = 245/336 (73%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9281 ||| ||||| || |||| || || || || | || | |||||||| ||| || || Sbjct 31018737 ATCCAGGATGTCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTT--CA 31018794 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || |||||||| ||||| | ||||||||| | |||||||||| | Sbjct 31018795 AAACCATCCATTTCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCT 31018854 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | ||| | | |||||| |||| || |||||||| ||||||| ||| |||||||| Sbjct 31018855 CCAATACCCGTTCCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAA 31018914 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 ||| ||| || || | | || ||||| ||||||| | |||||| ||||||||| Sbjct 31018915 GGTGCATTCTCTTTAGCCTTCTTGAAAAGATCACGAACCCGTGAGGCGCCAACACCAACA 31018974 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||||||||| | | | | | || | || ||||| ||| || |||||| || Sbjct 31018975 AACATCTCCACAAACTCAGATCCTG-AGATAGAGAAAAAGGGAACACCAGCTTCACCAGC 31019033 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||||| ||| || |||||||| || ||||| || Sbjct 31019034 AATGGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 31019069 >seq91 Length=344896 Score = 100 bits (110), Expect = 3e-16 Identities = 244/366 (67%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 9338 ||| ||||||||||| ||||| || || ||||| || ||||| | |||||||| | | Sbjct 231907 AAATCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTACCACC 231848 Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 || | ||||| | | ||| |||| || ||||||||||| ||||| || |||||| Sbjct 231847 ACCAAGC--CCAGCCCCTCTCTGCCTTCCAACCGCATCAATCTCGTCAATAAAAACAATA 231790 Query 9399 CATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 || || |||||| || | ||||| | ||| | |||||| || || || | Sbjct 231789 CAGGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTTGAAGCTCCAACTC 231732 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9516 ||||||| | || ||||| | || || | ||| | |||||| ||| || || | Sbjct 231731 CAACAAAAAGTTCAACAAACTCTGAAGCAGCACACGAAAAGAAGGGCACACCAGCCTCGC 231672 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576 | || | || || || || || ||||| || || || ||| || | | ||| || Sbjct 231671 CGGCGACCGCCCGAGCTAGCAGCGTCTTCCCAGTTCCCGGCGGCCCAACCAAAAGGCAAC 231612 Query 9577 CCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | |||||||| || ||| | |||| | ||||| | ||| | |||||| || | Sbjct 231611 CTTTGGGAATCTTAGCACCAAGAGCCGTGTATTTATCAGGATTCTTCAAAAAATCGACGA 231552 Query 9637 TCTCTT 9642 |||| Sbjct 231551 CTTCTT 231546 >seq293 Length=413263 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||| ||||| || || || || || || || || || || ||| Sbjct 227094 GCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCT 227035 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||| |||||||| | ||| | || |||||||| ||||||||||| ||| Sbjct 227034 GGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATA 226975 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 || || || |||||||| || | || ||||| || || || ||| | ||||| | Sbjct 226974 CCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAATGATTCAGA---GGCGTCAATC 226918 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || || |||||| | ||||| | | || ||||| |||| |||||| Sbjct 226917 CAGCGCAGTGCCCACTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGC 226865 >seq36 Length=6822877 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || |||||||| || |||||||| || || || || || || Sbjct 1783606 GCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAAAAGTGAGACCA 1783665 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || | |||||||| ||| | || |||||||| || ||||||||||| Sbjct 1783666 GGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAGAAACTACCAGAGAAGAAGATG 1783725 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| || || ||||| |||| || ||||| || || || Sbjct 1783726 CCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGA 1783766 >seq403 Length=1478721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || ||||| ||||||||||| ||||| || ||||| | ||| |||||| || || Sbjct 386241 GCAATTGACGCCAAATTGCATACAGCAGTTTCATCAGGACTCGTGAACTCTATTATCTCA 386182 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || ||||| |||||| ||| || || || | || ||||| ||||| ||| | ||||| Sbjct 386181 GTGCACAAATTGGAAGACTTTATGGTACCAAGGTTGTTTTGATTACTTTTTCTATTGCAA 386122 Query 106583 GCATCCTT 106590 |||||||| Sbjct 386121 GCATCCTT 386114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589320139500160