Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq89584 603 1e-167 seq2 262 4e-65 seq374 259 5e-64 seq64191 217 2e-51 >seq89584 Length=148959 Score = 603 bits (668), Expect = 1e-167 Identities = 731/991 (74%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| | || || ||| | ||| | ||||| | || ||||| ||||| || Sbjct 1137 TTCTGCAACTGGATTACCAGTACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1078 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||| || ||| | | ||| || || |||| || |||||||| || Sbjct 1077 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATCATTGCCTTCATTGCTGCCCC 1019 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || |||||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 1018 TCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 959 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||||||||| || |||| |||| || || ||| | || || |||||||| Sbjct 958 TATTATCTCAGGTGCCATTATTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAAT 899 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||| | | |||||||||||||| ||||| |||||||| | | || | Sbjct 898 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACT--TATT 841 Query 168790 CTTC--CACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATAC 168847 ||| ||||| || | || | || ||||||||| | |||||||| | | | Sbjct 840 GTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 781 Query 168848 AGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTT 168907 | || |||||| | |||||||| |||||| |||||||| || || | || || Sbjct 780 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACA 721 Query 168908 GCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGA 168967 || || ||| | | ||||| ||||||| || ||||||||||||||||||| ||||| Sbjct 720 GCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGA 661 Query 168968 ATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAT 169027 || ||||| || |||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct 660 ATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATTCTTATGCAT 601 Query 169028 CCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCAT 169087 || || || ||| ||| ||||| ||| | ||||| || || |||||| || |||||| Sbjct 600 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCAT 541 Query 169088 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTAT 169147 ||||| | ||||| ||| | ||||||| || || ||||| | || ||| || | Sbjct 540 GGTTCTTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAA 481 Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| || |||||||| |||||||||||||||||||| || || ||||| || || Sbjct 480 GGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTT 421 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA 169267 || |||| |||||||| ||||| ||||||||||| || | | || |||||| | Sbjct 420 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTG 361 Query 169268 GCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 169327 || | | || || || || | ||||| || || ||||||| |||| ||||| ||| Sbjct 360 GCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTACTATGGCGTTC 301 Query 169328 AACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCT 169387 ||||||||||| ||||| ||||||||||| || || ||| | ||| | ||| Sbjct 300 AACTTGAACGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCGTGTTATTAAC 241 Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | | || | || || ||||||||||||||||||||||| ||||| Sbjct 240 ACTTGGGCTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCATGAACGTAAT 181 Query 169448 GCTCACAACTTCCCACTAGACTTAGCATCTG 169478 || ||||||||||| ||||| |||| |||| Sbjct 180 GCACACAACTTCCCTCTAGATCTAGCTTCTG 150 >seq2 Length=81761211 Score = 262 bits (290), Expect = 4e-65 Identities = 310/420 (74%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 169059 TCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAG 169118 |||| || || |||||| || ||||||||||| | ||||| ||| | ||||||| | Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGG 48005825 Query 169119 AGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCT 169178 | || ||||| | || ||| || | ||||||| || |||||||| |||||||||| Sbjct 48005826 AAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCT 48005885 Query 169179 ATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCA 169238 |||||||||| || || ||||| || || || |||| |||||||| ||||| ||||||| Sbjct 48005886 ATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCA 48005945 Query 169239 ACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAA 169298 |||| || | | || |||||| | || | | || || || || | ||||| | Sbjct 48005946 ACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCA 48006005 Query 169299 CCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAG 169358 | || ||||||| |||| ||||| |||||||||||||| ||||| ||||||||||| | Sbjct 48006006 CTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCG 48006065 Query 169359 TTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACC 169418 | || ||| | ||| | ||| || |||| ||| | | || | || || | Sbjct 48006066 TAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATC 48006125 Query 169419 TTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTG 169478 |||||||||||||||||||||| ||||| || ||||||||||| ||||| |||| |||| Sbjct 48006126 TTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCTG 48006185 >seq374 Length=1248919 Score = 259 bits (286), Expect = 5e-64 Identities = 308/418 (74%), Gaps = 0/418 (0%) Strand=Plus/Plus Query 169061 GGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAG 169120 || || || |||||| || ||||||||||| | ||||| ||| | ||||||| || Sbjct 600774 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGGAA 600833 Query 169121 ACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTAT 169180 || ||||| | || ||| || | ||||||| || |||||||| |||||||||||| Sbjct 600834 ACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTAT 600893 Query 169181 AATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAAC 169240 |||||||| || || ||||| || || || |||| |||||||| ||||| ||||||||| Sbjct 600894 AATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC 600953 Query 169241 AACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACC 169300 || || | | || |||||| | || | | || || || || | ||||| || Sbjct 600954 AATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACT 601013 Query 169301 TCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTT 169360 || ||||||| |||| ||||| |||||||||||||| ||||| ||||||||||| || Sbjct 601014 GCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTA 601073 Query 169361 GTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTT 169420 || ||| | ||| | ||| || |||| ||| | | || | || || ||| Sbjct 601074 GTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATCTT 601133 Query 169421 GGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTG 169478 |||||||||||||||||||| ||||| || ||||||||||| ||||| |||| |||| Sbjct 601134 GGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCTG 601191 >seq64191 Length=168564 Score = 217 bits (240), Expect = 2e-51 Identities = 359/512 (70%), Gaps = 12/512 (2%) Strand=Plus/Plus Query 168512 ACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACA 168571 || || ||| | ||||| | || || || ||| | || |||||||| |||||| || Sbjct 58577 ACCAAAAACCGTCTTTACATCGGATGATTTGGTATTTTGATGATCCCTACTTTATTGACC 58636 Query 168572 GCAGCA---GCATGTTTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGA 168628 ||| | |||| | |||||| | || |||||||| | || | |||||| || || Sbjct 58637 GCAACTTATGCATTTATCATTG---CCTTCATTGCTGCCTCTCCAGCCGATATTGATGGT 58693 Query 168629 ATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTT 168688 || | |||||||| | || ||||| | ||||||||||| || |||||| ||| || Sbjct 58694 ATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATT 58753 Query 168689 GTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATC 168748 |||| |||| || || ||| | || || |||||||| ||||||| || | | Sbjct 58754 ATTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTT 58813 Query 168749 GATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTC--CACTTCCTAATCG 168806 |||||||||||||| || |||||||| | | || | ||| |||| || | | Sbjct 58814 GATGAGTGGTTATACAACAACGGTCCTTATGAACT--TATTGTTCTATACTTTTTACTTG 58871 Query 168807 GAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTT 168866 | | || ||||||||| | |||||||| | | | | || |||||| | |||| Sbjct 58872 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTT 58931 Query 168867 GGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTG-TATAC 168925 |||| |||||| |||||||| || || | || || | || || |||| | ||| Sbjct 58932 GGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAACTGT-TTACTTGATCTAC 58990 Query 168926 CCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAAC 168985 || |||| || || ||||||||||||||||||| ||||||| ||||| | |||||| Sbjct 58991 CCTATTGGCCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAAC 59050 Query 168986 TTCATGTTCGTATTCCAAGCAGAGCACAACAT 169017 |||||| | |||| ||| ||||||||||||| Sbjct 59051 TTCATGATTGTATGCCAGTCAGAGCACAACAT 59082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563809538296320