Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq89584 486 3e-132 seq2 194 2e-44 seq374 190 3e-43 seq64191 159 5e-34 >seq89584 Length=148959 Score = 486 bits (538), Expect = 3e-132 Identities = 695/979 (71%), Gaps = 0/979 (0%) Strand=Plus/Minus Query 215303 TGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCT 215362 ||| |||| |||||| || ||| | ||| | || ||||||||||| | ||||| ||| Sbjct 1128 TGGATTACCAGTACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 1069 Query 215363 TGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGAT 215422 | | | || || || || ||| | || ||||| ||||| ||||| |||||| Sbjct 1068 ACTTTATTGACCGCAACTTCTGTATTTATCATTGCCTTCATTGCTGCCCCTCCAGTCGAT 1009 Query 215423 ATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 215482 || || || || | || || ||| |||| ||| || | ||||| ||||| || ||||| Sbjct 1008 ATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCA 949 Query 215483 GGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCA 215542 ||||| || | |||| ||| || || || || || || ||||| || ||||||||| Sbjct 948 GGTGCCATTATTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCA 889 Query 215543 GCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTC 215602 ||| | ||||| || ||| | |||||||| || |||| |||| || | | ||||| Sbjct 888 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTTATTGTTCTACACTTT 829 Query 215603 CTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATG 215662 | ||||| | || ||| || | ||||||||||| || | | | |||||| Sbjct 828 TTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 769 Query 215663 AGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTT 215722 | |||||||| |||||| || || || ||||| | ||||| || || ||| | Sbjct 768 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGCTGTTTTCTTG 709 Query 215723 GTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACA 215782 | || || | ||||| || ||||||||||| |||||| | ||||| ||||| || Sbjct 708 ATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 649 Query 215783 TTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATG 215842 ||||||| |||| |||| |||||||| |||||||||||||| ||||| ||||| |||||| Sbjct 648 TTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATTCTTATGCATCCATTTCACATG 589 Query 215843 TTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTT 215902 ||||| || |||||||| ||||| ||||| | ||| ||| ||||| ||||| | || Sbjct 588 TTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTA 529 Query 215903 ACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTC 215962 || ||| | ||||||| || || ||||| | || ||| || | ||||||| || Sbjct 528 ACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTT 469 Query 215963 GGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATC 216022 || |||||||| ||||| || || || ||||| || || ||||| ||||| || | ||| Sbjct 468 GGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 409 Query 216023 TTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCT 216082 |||||||| || ||||||||| || | | || |||||| | || || | ||| Sbjct 408 TTCCAATATGCTAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCT 349 Query 216083 GTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGT 216142 || | |||||||| ||||| ||||| | ||||||||||||||| | |||||| Sbjct 348 GTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGT 289 Query 216143 TTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGAC 216202 || || || ||||| || || || || ||| |||||| |||||||| || Sbjct 288 TTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGAT 229 Query 216203 GTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 216262 | | || | || |||||||||||||||||||| || ||||| || ||||||||| Sbjct 228 ATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTC 169 Query 216263 CCATTAGACTTGGCTGCTG 216281 || |||| | ||| ||| Sbjct 168 CCTCTAGATCTAGCTTCTG 150 >seq2 Length=81761211 Score = 194 bits (214), Expect = 2e-44 Identities = 295/420 (70%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 215862 TCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAG 215921 |||| ||||| | ||| ||| ||||| ||||| | || || ||| | ||||||| | Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGG 48005825 Query 215922 AGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACAT 215981 | || ||||| | || ||| || | ||||||| || || |||||||| ||||| | Sbjct 48005826 AAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCT 48005885 Query 215982 ACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCA 216041 | || || ||||| || || ||||| ||||| || | ||||||||||| || ||||| Sbjct 48005886 ATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCA 48005945 Query 216042 ACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAA 216101 |||| || | | || |||||| | || || | ||||| | |||||||| | Sbjct 48005946 ACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCA 48006005 Query 216102 CTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTG 216161 |||| ||||| | ||||||||||||||| | |||||||| || || ||||| || | Sbjct 48006006 CTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCG 48006065 Query 216162 TCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGAC 216221 | || || ||| |||||| |||||||| || | | || | || | Sbjct 48006066 TAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATC 48006125 Query 216222 TTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 ||||||||||||||||||| || ||||| || ||||||||||| |||| | ||| ||| Sbjct 48006126 TTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCTG 48006185 >seq374 Length=1248919 Score = 190 bits (210), Expect = 3e-43 Identities = 293/418 (70%), Gaps = 0/418 (0%) Strand=Plus/Plus Query 215864 GGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAG 215923 || ||||| | ||| ||| ||||| ||||| | || || ||| | ||||||| || Sbjct 600774 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGGAA 600833 Query 215924 ACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATAC 215983 || ||||| | || ||| || | ||||||| || || |||||||| ||||| || Sbjct 600834 ACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTAT 600893 Query 215984 AACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAAC 216043 || || ||||| || || ||||| ||||| || | ||||||||||| || ||||||| Sbjct 600894 AATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC 600953 Query 216044 AACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACT 216103 || || | | || |||||| | || || | ||||| | |||||||| ||| Sbjct 600954 AATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACT 601013 Query 216104 GCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTC 216163 || ||||| | ||||||||||||||| | |||||||| || || ||||| || || Sbjct 601014 GCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTA 601073 Query 216164 GTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTT 216223 || || ||| |||||| |||||||| || | | || | || ||| Sbjct 601074 GTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATCTT 601133 Query 216224 GGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 ||||||||||||||||| || ||||| || ||||||||||| |||| | ||| ||| Sbjct 601134 GGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCTG 601191 >seq64191 Length=168564 Score = 159 bits (176), Expect = 5e-34 Identities = 298/435 (69%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 215387 TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTT 215446 || ||| | || ||||| ||||| |||| | |||||| || || || | || || ||| Sbjct 58649 TTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTATTCGTGAACCTGTT 58708 Query 215447 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAAC 215506 |||| ||| || | ||||| ||||| || ||||| ||| || | |||| ||| Sbjct 58709 TCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTATTCCTACTTCCGCA 58768 Query 215507 GCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 215566 || || || || || || ||||| || ||||||| || | | ||||| || ||| | ||| Sbjct 58769 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTTGATGAGTGGTTATAC 58828 Query 215567 AATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGC 215626 || || |||| |||| || | | |||| | ||||| | || ||| Sbjct 58829 AACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGTGTAGCTTGTTACATG 58888 Query 215627 GGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTAC 215686 || | ||||||||||| || | | | |||||| | |||||||| |||||| || Sbjct 58889 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTGCTGTTGCATAT 58948 Query 215687 TCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTG-TGTATCCATTCGGTCAGGGTTC 215745 || || ||||| | ||||| | || || |||| | || || | || || || Sbjct 58949 TCAGCTCCTGTTGCGGCTGCTACAACTGT-TTACTTGATCTACCCTATTGGCCAAGGAAG 59007 Query 215746 TTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCA 215805 ||||||||||| |||||| | ||||| ||||| | ||||||| |||| |||| | ||| Sbjct 59008 TTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTCATGATTGTATGCCA 59067 Query 215806 GGCTGAGCACAACAT 215820 | | ||||||||||| Sbjct 59068 GTCAGAGCACAACAT 59082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744247257624320