Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq876 109 4e-19 seq202 109 4e-19 seq2 104 2e-17 seq640 91.5 1e-13 >seq876 Length=1913211 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || ||| |||||||| || ||||| | ||| | || |||| ||| Sbjct 665728 ACCAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGCCAGGGTGCGGCCATCCTCC 665787 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || || |||||||||||| | || | ||||||||||| Sbjct 665788 AGTTGCTTGCCAGCAAAGATCAGCCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 665847 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| ||| | || | ||| | ||| || || | ||| || ||||| Sbjct 665848 ATTTTGGCTTTCACGTTATCAATAGTATCAGAGCTCTCCACCTCAAGGGTGATAGTTTTC 665907 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||||||||| ||||||||| Sbjct 665908 CCCGTAAGTGTCTTCACAAATATCTGCATA 665937 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| |||||||| || | |||| | || |||| || ||||||||||| ||||| Sbjct 665973 TTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCATCCTCAAGCTGTTTTCCAGCAAA 666032 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||| || | ||||||||| | || | ||||||||||| || || || ||| Sbjct 666033 TATCAGCCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACGTT 666092 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 |||| | ||| | ||| || || | ||| ||||| ||||| || || ||||| || Sbjct 666093 GTCTATAGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTTCCAGTAAGGGTCTTGAC 666152 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 666153 AAATATCTGCAT 666164 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| || ||| |||| |||| || ||||| |||||||| || Sbjct 530826 TTCCTTTTGGATGTTGTAGTCAGAGAGGGTTCGACCATCCTCGAGCTGCTTTCCGGCGAA 530767 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | |||||||| | || | ||||||||||| ||| || |||||| Sbjct 530766 GATCAACCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGAATTTTGGATTTGACATT 530707 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| ||| | ||| || || | || ||||| || || ||||| |||||||| Sbjct 530706 TTCGATCGTGTCAGAGCTCTCCACCTCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTCAC 530647 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 530646 AAATATCTGCAT 530635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || |||| |||| | || |||| || ||||||||||| || || Sbjct 665517 TTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAA 665576 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| |||| | |||||| ||||| |||||| || ||| Sbjct 665577 GATGAGCCTCTGCTGATCTGGCGGTATCCCCTCTTTGTCCTGAATCTTTGCCTTCACGTT 665636 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || ||| || || | || || ||||| || || || || ||||| Sbjct 665637 ATCAATTGTGTCTGAACTCTCCACCTCAAGAGTGATAGTTTTCCCAGTAAGTGTTTTCAC 665696 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 665697 AAATATCTGCATA 665709 >seq202 Length=4793652 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| ||||||||| |||||||| || | || | || |||| || Sbjct 4329558 AACAAGGTGAAGTGTCGATTCTTTCTGGATGTTATAATCAGCCAGCGTGCGACCATCCTC 4329499 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| |||||||| || || || ||||| || | || | |||||||| || Sbjct 4329498 GAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGAATGCCCTCCTTATCCTG 4329439 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || ||| | || | ||| | || || || | ||| ||||| || Sbjct 4329438 AATCTTCGCCTTCACGTTATCAATTGTATCAGAGCTTTCTACCTCAAGGGTGATGGTCTT 4329379 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || ||||||||||||||||| ||||| Sbjct 4329378 TCCAGTAAGAGTCTTCACAAAGATTTGCAT 4329349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || |||| |||| | || |||| || ||||| || || ||||| Sbjct 4328989 TTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAA 4328930 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| ||||||||| | || | || || ||||| ||||| ||||| Sbjct 4328929 GATAAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCCTGTATCTTAGCCTTGACATT 4328870 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | |||||| || | || || || || || || || |||||||| Sbjct 4328869 GTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTGATTGTCTTGCCGGTAAGCGTCTTCAC 4328810 Query 34970 AAAGATCTGCATA 34982 || ||||||||| Sbjct 4328809 GAAAATCTGCATA 4328797 >seq2 Length=81761211 Score = 104 bits (114), Expect = 2e-17 Identities = 150/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| ||||||| || | || |||| || || || Sbjct 19640707 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGCCCATCCTCAAGTTG 19640766 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||||||||| || || | |||||||| | || | ||||||||||| ||||| Sbjct 19640767 CTTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTT 19640826 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTC 34953 ||| || | ||||||| | ||| || |||||| || | ||| ||||| || | Sbjct 19640827 GGCTTTCAC----GTTATCGATGGTGTCCGAGCTCTCAACCTCCAAGGTAATGGTCTTCC 19640882 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||||||||| ||||||||||| Sbjct 19640883 CAGTAAGAGTCTTCACGAAGATCTGCAT 19640910 >seq640 Length=221176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| || ||| |||||||| || || || | ||| | || | || || Sbjct 161962 AACGAGGTGAAGCGTCGATTCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTC 162021 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| |||| || ||||| ||| | || | ||||||||||| Sbjct 162022 AAGCTGCTTCCCAGCAAAGATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTG 162081 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| ||| ||| | |||| || || ||| || |||| ||| || || || Sbjct 162082 AATCTTCGCTTTAACGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTT 162141 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || || || || ||||| ||||| || Sbjct 162142 CCCCGTTAGGGTTTTGACGAAGATTTGCATCTT 162174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324279163412352