Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq89584 630 8e-176 seq2 273 2e-68 seq374 271 9e-68 seq64191 226 3e-54 >seq89584 Length=148959 Score = 630 bits (698), Expect = 8e-176 Identities = 736/991 (74%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 83967 ACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCA 84026 || || || ||||| | |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct 149 ACAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCA 208 Query 84027 AGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACA 84086 || |||||||| | | ||| ||||| || || | |||||| ||||||||| || Sbjct 209 AGATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACT 268 Query 84087 AGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCA 84146 | || || || ||||| || |||| || || ||||| || |||| ||||| |||| Sbjct 269 ACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCA 328 Query 84147 GCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTG 84206 | ||||| || || || || ||||||||||||||||| || || | ||||| |||| Sbjct 329 GTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTG 388 Query 84207 TTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTA 84266 ||||| |||||| |||||||| | || || || || || ||||| || ||||||||| Sbjct 389 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTA 448 Query 84267 TAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTT 84326 || ||||| || |||||||| || ||||||| | || || ||||||| || ||| Sbjct 449 TAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTT 508 Query 84327 TCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCG 84386 || | ||||| | |||||| || | ||||||||||| ||| |||||| | || ||| Sbjct 509 TCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCG 568 Query 84387 AATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGG 84446 ||||||||||| || || ||||||||||| ||||||||||| ||||| || || |||||| Sbjct 569 AATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCCTGG 628 Query 84447 AAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAA 84506 || |||| |||| ||||||| || || || || || | ||||| |||||||||||| Sbjct 629 AATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTT 688 Query 84507 CCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAA 84566 ||||| || | ||| || | | ||| ||||| | || || ||||| ||||| || || Sbjct 689 CCTTGACCAATAGGGTAGATCAAGAAAACAGCTGTAGCAGCCGCAACAGGAGCTGAATAT 748 Query 84567 GCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATG 84626 |||||| ||||| || |||||||| ||||| | ||||||||| |||||||||||| Sbjct 749 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATG 808 Query 84627 TAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATAT 84686 ||| | | |||||| | ||||| | |||| ||||| |||||| || ||||| ||| Sbjct 809 TAACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTGTAT 868 Query 84687 AGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTA 84746 | ||| || || | | |||||||||||| || || || ||||| | ||| ||||| Sbjct 869 AACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCG 928 Query 84747 GAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACT 84806 || | |||| | |||||| || || || |||||||| || | ||||| |||| || Sbjct 929 GAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACA 988 Query 84807 GGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACA 84865 || ||||| ||||| |||||||| ||||| || ||| ||| ||| |||||||| || ||| Sbjct 989 GGTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAATACA 1048 Query 84866 GACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACG 84925 || ||| || | | || ||| || ||||| | | |||||||| || | || | ||| Sbjct 1049 GA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACG 1107 Query 84926 GTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 ||| | ||| ||| | ||| | |||||| Sbjct 1108 GTTTTCAGTACTGGTAATCCAGTTGCAGAAG 1138 >seq2 Length=81761211 Score = 273 bits (302), Expect = 2e-68 Identities = 313/421 (74%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 83967 ACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCA 84026 || || || ||||| | |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct 48006186 ACAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCA 48006127 Query 84027 AGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACA 84086 || |||||||| | | ||| ||||| || || | |||||| ||||||||| || Sbjct 48006126 AGATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACT 48006067 Query 84087 AGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCA 84146 | || || || ||||| || |||| || || ||||| || |||| ||||| |||| Sbjct 48006066 ACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCA 48006007 Query 84147 GCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTG 84206 | ||||| || || || || ||||||||||||||||| || || | ||||| |||| Sbjct 48006006 GTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTG 48005947 Query 84207 TTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTA 84266 ||||| |||||| |||||||| | || || || || || ||||| || ||||||||| Sbjct 48005946 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTA 48005887 Query 84267 TAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTT 84326 || ||||| || |||||||| || ||||||| | || || ||||||| || ||| Sbjct 48005886 TAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTT 48005827 Query 84327 TCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCG 84386 || | ||||| | |||||| || | ||||||||||| ||| |||||| | || ||| Sbjct 48005826 TCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCG 48005767 Query 84387 A 84387 | Sbjct 48005766 A 48005766 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602 || || ||||| ||||| || || |||||| ||||| || ||||||| || | | Sbjct 22128664 GCAGCCGCAACAGGAGCTGAATATGCAACAACAATCCAAGGGTGCATACCCTGATGGAAA 22128605 Query 84603 GAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||| ||||||||||||||| | | ||||||| | ||||| | |||| | Sbjct 22128604 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTAAAAAGTGTAGAACAATA 22128545 Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAAT 84718 | || |||||| || ||||| |||| ||| || || ||| || ||||||||| || Sbjct 22128544 ATTTCATAAGGACCGCCATTGTATAACCACTCATCAATAGATGTTGCTTCCCATAT 22128489 >seq374 Length=1248919 Score = 271 bits (300), Expect = 9e-68 Identities = 306/410 (75%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 83967 ACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCA 84026 || || || ||||| | |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct 601192 ACAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCA 601133 Query 84027 AGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACA 84086 || |||||||| | | ||| ||||| || || | |||||| ||||||||| || Sbjct 601132 AGATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACT 601073 Query 84087 AGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCA 84146 | || || || ||||| || |||| || || ||||| || |||| ||||| |||| Sbjct 601072 ACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCA 601013 Query 84147 GCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTG 84206 | ||||| || || || || ||||||||||||||||| || || | ||||| |||| Sbjct 601012 GTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTG 600953 Query 84207 TTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTA 84266 ||||| |||||| |||||||| | || || || || || ||||| || ||||||||| Sbjct 600952 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTA 600893 Query 84267 TAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTT 84326 || ||||| || |||||||| || ||||||| | || || ||||||| || ||| Sbjct 600892 TAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTT 600833 Query 84327 TCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAG 84376 || | ||||| | |||||| || | ||||||||||| ||| |||||| Sbjct 600832 TCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAG 600783 >seq64191 Length=168564 Score = 226 bits (250), Expect = 3e-54 Identities = 358/508 (70%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 84429 ATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGC 84488 ||||| || || | |||| | |||| |||| ||||||| | || || || || | ||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 84489 ATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACA-CAAGGAATACAGCAGATGCCGC 84547 || |||||||||||| ||||| || | ||| || | |||| || |||| | || || Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAA-ACAGTTGTAGCAGC 58964 Query 84548 TGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAG 84607 ||||| ||||| || || |||||| ||||| || | |||||| ||||| | ||| Sbjct 58963 CGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAG 58904 Query 84608 TTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTG 84667 |||||| ||||||||||||||| | | |||||| | |||| | |||| ||||| Sbjct 58903 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTC 58844 Query 84668 ATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAA 84727 |||||| || || |||| ||| || || | | | || ||||||| || || || || Sbjct 58843 ATAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAA 58784 Query 84728 ATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787 ||| | ||| ||||| || | |||| | | ||| || || || |||||||| || Sbjct 58783 ATGCAAACCTATAGCTGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCATA 58724 Query 84788 CATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAAC 84847 | ||||| |||| || || ||||| ||||| |||||||| |||| | ||| ||| Sbjct 58723 AAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCAAT 58664 Query 84848 GAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAA 84906 ||| |||||||| || || | ||| || | | || ||| || ||||| | | | |||| Sbjct 58663 GAAGGCAATGATAAATGCATA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAATACCAA 58605 Query 84907 ACCAACCAACATAGATACGGTTGTTAGT 84934 | || || | || | |||||| || || Sbjct 58604 ATCATCCGATGTAAAGACGGTTTTTGGT 58577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570633887822720