Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq89584 459 8e-125 seq2 188 2e-43 seq374 187 7e-43 seq64191 159 1e-34 >seq89584 Length=148959 Score = 459 bits (508), Expect = 8e-125 Identities = 698/982 (71%), Gaps = 10/982 (1%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| |||| |||||||| |||||||| || | |||||||| || || | ||||| ||| Sbjct 1128 TGGATTACCAGTACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGAT-CCC 1070 Query 25871 TGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAG 25928 | ||| | | | || ||| | ||| ||||| |||||||||| || || || || || | Sbjct 1069 TACTTTATTGACCGCAACTTC-TGTATTTATCATTGCCTTCATTGCTGCCCCTCCAGTCG 1011 Query 25929 ATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATAT 25988 |||| ||||| || ||||| || ||||| || || || | || ||||||||||| || | Sbjct 1010 ATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCT 951 Query 25989 CAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAG 26048 |||| || | | || | || || || || | ||||||||||| || ||||||| Sbjct 950 CAGGTGCCATTATTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAG 891 Query 26049 CTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACT 26108 | | | | || |||||| ||||||||||||| || ||| |||| ||| | | |||| Sbjct 890 CAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTTATTGTTCTACACT 831 Query 26109 TCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAA 26168 | ||| | || ||||| || || | |||||||||| || | | || || | Sbjct 830 TTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 771 Query 26169 TGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCT 26228 || | || ||||| |||||||||| |||| || | | || ||| || || |||| Sbjct 770 TGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGCTGTTTTCT 711 Query 26229 TAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTA 26288 | | || ||| | || ||||| ||||| |||||| |||||| | || || ||||||| Sbjct 710 TGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTA 651 Query 26289 CTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATA 26348 |||| ||||| ||| | |||||||| ||||| || || || || ||||| ||||| || | Sbjct 650 CTTTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATTCTTATGCATCCATTTCACA 591 Query 26349 TGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGG 26408 || || || ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 590 TGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGG 531 Query 26409 TTACTTCCTCACTTATTGCA--GAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAA 26466 | |||| || ||| | || ||||| || || | | || ||| | || || | Sbjct 530 TAACTT-CTAGTTTAAT-CAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAG 473 Query 26467 GTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATT 26526 ||||| ||||| ||||| || ||||||||||| || || || || || ||||| |||| Sbjct 472 ATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATT 413 Query 26527 AATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTG 26586 || || || ||||| ||||| || || |||||| | |||||||| | ||| |||| Sbjct 412 GATCTTCCAATATGCTAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTG 353 Query 26587 GCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAA 26646 ||| || || || || ||| | || || ||||||| | || ||||| || ||| | || Sbjct 352 GCCTGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAA 293 Query 26647 TGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGG 26705 |||||||| |||||||| || ||||| ||| | || | | || || | || |||| Sbjct 292 CGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCGTGTTATTAAC-ACTTGGG 234 Query 26706 CTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATA 26765 ||||| | |||| || ||||| || || | ||||| ||||| || |||||||| || | Sbjct 233 CTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACA 174 Query 26766 ACTTTCCACTTGACTTAGCATC 26787 |||| || || || |||| || Sbjct 173 ACTTCCCTCTAGATCTAGCTTC 152 >seq2 Length=81761211 Score = 188 bits (208), Expect = 2e-43 Identities = 298/421 (71%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 26370 TCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAG 26429 |||| || | || ||| ||||||||| || |||||| ||||| | ||| | ||| Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAAT-CAG 48005823 Query 26430 --AAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGAC 26487 |||| || || | | || ||| | || || | ||||| ||||| ||||| || Sbjct 48005824 GGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 48005883 Query 26488 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTT 26547 ||||||||||| || || || || || ||||| |||| || || || ||||| ||||| Sbjct 48005884 CTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 48005943 Query 26548 TAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCT 26607 || || |||||| | |||||||| | ||| ||||||| || || || || ||| | Sbjct 48005944 CAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTT 48006003 Query 26608 GACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTC 26667 || || ||||||| | || ||||| || ||| | || |||||||| |||||||| || Sbjct 48006004 CACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATC 48006063 Query 26668 AGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTA 26726 ||||| ||| | || | | || || | || ||||||||| | |||| || |||| Sbjct 48006064 CGTAGTTGATAGCCAAGGTCGTGTTATTAAC-ACTTGGGCTGATATCATAAATCGTGCTA 48006122 Query 26727 ACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGCAT 26786 | || || | ||||| ||||| || |||||||| || ||||| || || || |||| | Sbjct 48006123 ATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTT 48006182 Query 26787 C 26787 | Sbjct 48006183 C 48006183 >seq374 Length=1248919 Score = 187 bits (206), Expect = 7e-43 Identities = 291/410 (71%), Gaps = 6/410 (1%) Strand=Plus/Plus Query 26381 CTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAG--AAACGACAG 26438 || ||| ||||||||| || |||||| ||||| | ||| | ||| |||| || | Sbjct 600783 CTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAAT-CAGGGAAACCACTG 600840 Query 26439 AGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTG 26498 | | | || ||| | || || | ||||| ||||| ||||| || |||||||||| Sbjct 600841 AAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTG 600900 Query 26499 TCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCC 26558 | || || || || || ||||| |||| || || || ||||| ||||| || || || Sbjct 600901 TAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCC 600960 Query 26559 GTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGG 26618 |||| | |||||||| | ||| ||||||| || || || || ||| | || || ||| Sbjct 600961 GTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTGG 601020 Query 26619 GTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT- 26677 |||| | || ||||| || ||| | || |||||||| |||||||| || ||||| ||| Sbjct 601021 GTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTAGTTGATA 601080 Query 26678 GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTT 26737 | || | | || || | || ||||||||| | |||| || ||||| || || | Sbjct 601081 GCCAAGGTCGTGTTATTAAC-ACTTGGGCTGATATCATAAATCGTGCTAATCTTGGTATG 601139 Query 26738 GAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATC 26787 ||||| ||||| || |||||||| || ||||| || || || |||| || Sbjct 601140 GAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTC 601189 >seq64191 Length=168564 Score = 159 bits (176), Expect = 1e-34 Identities = 344/506 (68%), Gaps = 10/506 (2%) Strand=Plus/Plus Query 25829 AACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCG-CAGCCAC 25887 |||||||| || | ||||| || || | | ||||| |||| ||| | | | || || Sbjct 58583 AACCGTCTTTACATCGGATGATTTGGTATTTTGATGAT-CCCTACTTTATTGACCGCAAC 58641 Query 25888 TACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTG 25946 | ||| ||||| |||||||||| || || | || | ||||| ||||| || |||| Sbjct 58642 TT-ATGCATTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTATTCGTG 58700 Query 25947 AGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAG-CAGTCGTCC-- 26003 | || ||||| || || || | || ||||||||||| || ||| | | || | ||| Sbjct 58701 AACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTATTCCTA 58760 Query 26004 CCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACG 26063 | ||| | || || || | ||||||||||| || ||||||| | | | || | Sbjct 58761 CTTCCGC---AGCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTTGATG 58817 Query 26064 AGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAG 26123 ||||| ||||||| ||| || ||| |||| ||| | | |||| ||| | || |||| Sbjct 58818 AGTGGTTATACAACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGTGTAG 58877 Query 26124 CAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATAT 26183 | || || | |||||||||| || | | || || ||| | || ||||| Sbjct 58878 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTG 58937 Query 26184 TTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCG 26243 |||||||||| |||| || | | || ||| | || | ||| | || ||| | | Sbjct 58938 CTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAACTGTTTACTTGATCTACCCTATTG 58997 Query 26244 GACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGT 26303 | ||||| ||||| |||||| |||||| | || || ||||||| ||| ||||| ||| Sbjct 58998 GCCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTCATGA 59057 Query 26304 TCGTATTCCAAGCAGAACATAATATA 26329 | |||| ||| |||| || || ||| Sbjct 59058 TTGTATGCCAGTCAGAGCACAACATA 59083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146570310988416