Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq89584 583 3e-162 seq64191 233 6e-57 seq374 233 6e-57 seq2 233 6e-57 >seq89584 Length=148959 Score = 583 bits (646), Expect = 3e-162 Identities = 724/987 (73%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 155 GCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGATTA 214 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 ||||| || | || ||| ||||||||| || | | ||| |||| ||||| || Sbjct 215 GCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTA---TCAACTACG 271 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || || || ||||| ||||| | || || |||||||| || |||| || || Sbjct 272 GATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGTG 331 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||||| ||||||||| || |||| |||||| Sbjct 332 AACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTTG 391 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 392 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAG 451 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 |||||||||||||| || ||| | || || | || ||| | |||| ||||| Sbjct 452 GTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTCC 511 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 | || | |||||| || | | |||||||||||| ||| | | || |||||| Sbjct 512 CTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCGAAT 571 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| || || | |||||| || ||||||||||| || ||||| |||||||||||| Sbjct 572 ACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCCTGGAAT 631 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 || | ||| ||||| ||||||||||| || || | ||||||||||||| ||||||||| Sbjct 632 ACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 691 Query 5732 TGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 || || | |||||| | || || || | ||| || || ||||| || ||||||||||| Sbjct 692 TGACCAATAGGGTAGATCAAGAAAACAGCTGTA-GCAGCCGCAACAGGAGCTGAATATGC 750 Query 5791 TACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 || |||||| || ||||| || | | | ||||||||||||| | || |||| ||| Sbjct 751 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 810 Query 5851 AGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAG 5910 | || | ||||| | ||||| | || | |||| || || || |||||||| | Sbjct 811 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTGTATAA 870 Query 5911 CCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGA 5970 ||| ||||| | | ||||||||||| || || || || || || || || || ||| Sbjct 871 CCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCGGA 930 Query 5971 GCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGG 6030 | || | || ||| ||||| || || ||||||||||| |||||||| || | || || Sbjct 931 AGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGG 990 Query 6031 TTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGT 6090 |||||| || || || || |||||||| || ||||| | ||| || | |||||| ||| Sbjct 991 TTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAATACAGA 1050 Query 6091 AGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 ||||||||| || | | || ||||| || ||||||||||| || | || || ||||| Sbjct 1051 AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTT 1110 Query 6151 GTTGGTGCTAGTAACCCAGTCACAGAA 6177 | || || |||| ||||| ||||| Sbjct 1111 TTCAGTACTGGTAATCCAGTTGCAGAA 1137 >seq64191 Length=168564 Score = 233 bits (258), Expect = 6e-57 Identities = 360/509 (71%), Gaps = 6/509 (1%) Strand=Plus/Minus Query 5651 ATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGC 5710 || ||||| |||| |||| |||| | ||| ||||| ||| ||||||| || || | |||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 5711 ATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGA-GTAGGCTGC 5769 ||||||||| ||||||||| || || | |||||| | || | || | |||| | || Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAAACAGTTGTAG-CAGC 58964 Query 5770 GGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAG 5829 ||||| || ||||||||||| || |||||| || | ||| || | | | ||||||| Sbjct 58963 CGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAG 58904 Query 5830 TTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTG 5889 |||||| | || |||| |||| || | ||||| | |||| | || | |||| Sbjct 58903 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTC 58844 Query 5890 GTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAG 5947 || || || ||||| | ||| ||||| | |||| || ||||||| || || || Sbjct 58843 ATAAGGACCGTTGTTGTATAACCACTCATCAACAGATT--CTACTTCCCATATTGGGTAA 58786 Query 5948 AAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCA 6007 || || || || || || ||| | || | || | | | ||| || || ||||||||| Sbjct 58785 AAATGCAAACCTATAGCTGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCA 58726 Query 6008 TAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCT 6067 || |||||||| || | || |||||||| || || || || ||| |||| | ||||| Sbjct 58725 TAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCA 58666 Query 6068 ACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCA 6127 | ||| || | ||||||||| ||||||||| || | | || ||||| || | |||| Sbjct 58665 ATGAAGGCAATGATAAATGCATAAGTTGCGGTCAATAAAGTAGGGATCATCAAAATACCA 58606 Query 6128 AACCACCCCACATAGAGGCGGTTGTTGGT 6156 || || || | || || ||||| ||||| Sbjct 58605 AATCATCCGATGTAAAGACGGTTTTTGGT 58577 >seq374 Length=1248919 Score = 233 bits (258), Expect = 6e-57 Identities = 250/329 (76%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 601186 GCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGATTA 601127 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 ||||| || | || ||| ||||||||| || | | ||| |||| ||||| || Sbjct 601126 GCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTA---TCAACTACG 601070 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || || || ||||| ||||| | || || |||||||| || |||| || || Sbjct 601069 GATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGTG 601010 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||||| ||||||||| || |||| |||||| Sbjct 601009 AACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTTG 600950 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 600949 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAG 600890 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCC 5520 |||||||||||||| || ||| | || || Sbjct 600889 GTTTCTTCCTCTTGACCAAATCTGTAACC 600861 >seq2 Length=81761211 Score = 233 bits (258), Expect = 6e-57 Identities = 250/329 (76%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 48006180 GCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGATTA 48006121 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 ||||| || | || ||| ||||||||| || | | ||| |||| ||||| || Sbjct 48006120 GCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTA---TCAACTACG 48006064 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || || || ||||| ||||| | || || |||||||| || |||| || || Sbjct 48006063 GATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGTG 48006004 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||||| ||||||||| || |||| |||||| Sbjct 48006003 AACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTTG 48005944 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 48005943 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAG 48005884 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCC 5520 |||||||||||||| || ||| | || || Sbjct 48005883 GTTTCTTCCTCTTGACCAAATCTGTAACC 48005855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152487209829024