Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq89584 551 2e-152 seq64191 242 1e-59 seq374 203 1e-47 seq2 203 1e-47 seq767 86.0 2e-12 >seq89584 Length=148959 Score = 551 bits (610), Expect = 2e-152 Identities = 713/982 (73%), Gaps = 2/982 (0%) Strand=Plus/Plus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| |||| || ||||||||||||||||| ||||| |||||||| |||||||| || | Sbjct 150 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 | ||||| || | || ||||||||||| | || | || | | |||||| | Sbjct 210 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACTA 269 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 | || || || || ||||| ||||| | || || |||||||| | |||| ||| | Sbjct 270 CGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAG 329 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | | ||| || | || ||||||||||||| ||||||||| || |||| ||| | Sbjct 330 TGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGT 389 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || |||||||| |||||||| | || ||||| || |||||||| || ||||| |||| Sbjct 390 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTAT 449 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || ||||| ||||| || ||| | || || | || ||| ||| |||| |||| Sbjct 450 AGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTT 509 Query 25808 CAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCG 25866 | | || ||| | ||||| || | | || ||||||||| ||||| | || ||| Sbjct 510 CCCTGATTAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCG 568 Query 25867 AATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGA 25926 ||||| || || || || | ||| || || ||||||||||| || ||||| |||||||| Sbjct 569 AATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCCTGG 628 Query 25927 AAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTC 25986 || |||| ||| || |||||||| || || || || | ||||||||||||||||||||| Sbjct 629 AATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTT 688 Query 25987 CCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAA 26046 ||||| |||| |||||||| ||||| ||||| || || |||||||| |||||||| Sbjct 689 CCTTGACCAATAGGGTAGATCAAGAAAACAGCTGTAGCAGCCGCAACAGGAGCTGAATAT 748 Query 26047 GCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAG 26106 || ||| ||||| || | ||| || || | ||||||||||||| | || |||| | Sbjct 749 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATG 808 Query 26107 TAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATAC 26166 ||| | | || | | |||||| | |||||||||| ||| || || || || || Sbjct 809 TAACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTGTAT 868 Query 26167 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 26226 |||||||| || | | ||| |||||||| |||||||| || || | ||| || || Sbjct 869 AACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCG 928 Query 26227 GATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 26286 || | || | || || |||||||| || ||||||||||| |||| | || || ||| Sbjct 929 GAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACA 988 Query 26287 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 26346 || |||||||||||||| ||||| || ||||| ||||||| || ||||| | |||| | Sbjct 989 GGTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAATACA 1048 Query 26347 GTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGG 26406 | ||| || || | | ||||||||| | || |||||||| || | || || ||| Sbjct 1049 GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGG 1108 Query 26407 TTGTTTGTACTTGTAACCCAGT 26428 || | ||||| |||| ||||| Sbjct 1109 TTTTCAGTACTGGTAATCCAGT 1130 >seq64191 Length=168564 Score = 242 bits (268), Expect = 1e-59 Identities = 358/507 (71%), Gaps = 0/507 (0%) Strand=Plus/Minus Query 25909 ATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGC 25968 || ||||| |||| ||| | |||| ||| || |||||| | || || || || | |||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 25969 ATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCT 26028 ||||||||||||||||| ||||| |||| |||||||| ||| | |||| || || Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAAACAGTTGTAGCAGCC 58963 Query 26029 GCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGT 26088 |||||||| |||||||| || ||| ||||| || | ||| || || | |||||||| Sbjct 58962 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAGT 58903 Query 26089 TCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGA 26148 ||||| | || |||| |||| | | || | | ||||| | |||||||||| | Sbjct 58902 TCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTCA 58843 Query 26149 TATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 26208 || || || ||| || |||||||| || | | | | ||||||| |||||||| || Sbjct 58842 TAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAAA 58783 Query 26209 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAG 26268 || | ||| || || || | || | || | | |||||| || ||||||||||| Sbjct 58782 TGCAAACCTATAGCTGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCATAA 58723 Query 26269 AGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACA 26328 |||| | || || ||||| |||||||||||||| ||||| | |||| ||||||| Sbjct 58722 AGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCAATG 58663 Query 26329 AATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAAC 26388 || ||||| | |||||| ||| || || | | ||||||||| | | ||||| Sbjct 58662 AAGGCAATGATAAATGCATAAGTTGCGGTCAATAAAGTAGGGATCATCAAAATACCAAAT 58603 Query 26389 CACCCCACATAGAGGCGGTTGTTTGTA 26415 || || | || || ||||| || ||| Sbjct 58602 CATCCGATGTAAAGACGGTTTTTGGTA 58576 >seq374 Length=1248919 Score = 203 bits (224), Expect = 1e-47 Identities = 292/409 (71%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| |||| || ||||||||||||||||| ||||| |||||||| |||||||| || | Sbjct 601191 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 601132 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 | ||||| || | || ||||||||||| | || | || | | |||||| | Sbjct 601131 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACTA 601072 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 | || || || || ||||| ||||| | || || |||||||| | |||| ||| | Sbjct 601071 CGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAG 601012 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | | ||| || | || ||||||||||||| ||||||||| || |||| ||| | Sbjct 601011 TGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGT 600952 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || |||||||| |||||||| | || ||||| || |||||||| || ||||| |||| Sbjct 600951 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTAT 600892 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || ||||| ||||| || ||| | || || | || ||| ||| |||| |||| Sbjct 600891 AGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTT 600832 Query 25808 CAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 25855 | | || ||| | ||||| || | | || ||||||||| ||||| Sbjct 600831 CCCTGATTAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTGAATA 600784 >seq2 Length=81761211 Score = 203 bits (224), Expect = 1e-47 Identities = 292/409 (71%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| |||| || ||||||||||||||||| ||||| |||||||| |||||||| || | Sbjct 48006185 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 48006126 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 | ||||| || | || ||||||||||| | || | || | | |||||| | Sbjct 48006125 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACTA 48006066 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 | || || || || ||||| ||||| | || || |||||||| | |||| ||| | Sbjct 48006065 CGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAG 48006006 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 | | ||| || | || ||||||||||||| ||||||||| || |||| ||| | Sbjct 48006005 TGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGT 48005946 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 | || |||||||| |||||||| | || ||||| || |||||||| || ||||| |||| Sbjct 48005945 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTAT 48005886 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || ||||| ||||| || ||| | || || | || ||| ||| |||| |||| Sbjct 48005885 AGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTT 48005826 Query 25808 CAC-GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 25855 | | || ||| | ||||| || | | || ||||||||| ||||| Sbjct 48005825 CCCTGATTAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTGAATA 48005778 Score = 80.6 bits (88), Expect = 8e-11 Identities = 127/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 || || |||||||| |||||||| || ||| ||||| || ||| || | || Sbjct 22128664 GCAGCCGCAACAGGAGCTGAATATGCAACAACAATCCAAGGGTGCATACCCTGATGGAAA 22128605 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 ||||||||||| | || |||| |||| | | || || | |||||| | |||||| Sbjct 22128604 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTAAAAAGTGTAGAACAATA 22128545 Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202 | || ||| || || || || || |||||||| || | | || |||||||| |||| | Sbjct 22128544 ATTTCATAAGGACCGCCATTGTATAACCACTCATCAATAGATGTTGCTTCCCATATTGAG 22128485 Query 26203 TA 26204 || Sbjct 22128484 TA 22128483 >seq767 Length=205183 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 ||||| || |||||||| || | | ||| || || ||| | | | || | ||| Sbjct 188223 GCTTCTCATATTGGGTAAAAAAGCAAACCTATAGCTGCAGAAGTAAGAATAATGACACCT 188164 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCT--CCTGAGACAGGCTCACGAATACCATCTA 26305 ||||| |||||||||||||| ||||| | || || |||| |||||||||||||| | Sbjct 188163 GAGATAATGTTGTTTCCATAAAGTAAAGACACCCAGAAACAGATTCACGAATACCATCAA 188104 Query 26306 TATCCACGGGAGGCGCAGCAA 26326 |||| || ||||| ||||||| Sbjct 188103 TATCAACTGGAGGGGCAGCAA 188083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151831907688384