Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq876 96.9 3e-15 seq700 87.8 1e-12 seq640 86.0 5e-12 >seq876 Length=1913211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | || || ||| ||| ||||||||||| ||||||| Sbjct 666166 CCACCCCTGAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATATTATAATCAGCA 666225 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| | || || | ||||| |||||||| ||||| | ||| ||||||| |||| Sbjct 666226 AGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGGGGA 666285 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||| ||||| | | | || || ||||||| Sbjct 666286 ATGCCCTCCTTATCTTGGATCTTAGCCTTTACGTTGTCGATGGTGTCAGAGCTCTCCACC 666345 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | || || || |||||||||||| Sbjct 666346 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATC 666393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | || | ||| || ||| || ||||| || ||||| ||||| Sbjct 530861 CCCCCTCTGAGGCGGAGAACGAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 530802 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || || | |||||| ||||| || |||| | ||| || |||| ||| Sbjct 530801 AGGGTTCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGG 530742 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||| || ||| ||| | | | || || ||||||| Sbjct 530741 ATGCCCTCCTTGTCTTGAATTTTGGATTTGACATTTTCGATCGTGTCAGAGCTCTCCACC 530682 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||| || || || || || | || || ||||| ||||||||| Sbjct 530681 TCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCATC 530634 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | ||||| || || || || ||||||||||||| Sbjct 666394 CCACCCCTAAGACGAAGCACAAGGTGTAGGGTAGATTCCTTCTGGATATTGTAATCAGCA 666453 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| | || || | |||||| |||||||| ||||| | ||||||||||| || Sbjct 666454 AGGGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAGCCTCTGTTGATCCGGCGGG 666513 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || || ||||||| Sbjct 666514 ATGCCCTCCTTGTCCTGTATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCCACC 666573 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | ||||| || || ||||||||| Sbjct 666574 TCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCATC 666621 >seq700 Length=617226 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| || |||| |||| | || | || || | |||||| ||||| || Sbjct 335060 CTCCTTCTGGATATTATAGTCAGCTAGAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAA 335001 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || || || |||| |||| ||| |||||||| ||||| || || Sbjct 335000 GATAAGGCGTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTT 334941 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||||||||||| || ||||| || ||||| | |||||||| Sbjct 334940 GTCAATGGTGTCGGATGACTCCACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTTAC 334881 Query 48755 AAAAATCTGCATC 48767 || ||||||||| Sbjct 334880 GAAGATCTGCATC 334868 >seq640 Length=221176 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||||||||| | || | || |||| || | |||||| || ||||| Sbjct 161981 TCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCAGCAAAG 162040 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | ||||| ||||| | |||| |||||||||||| |||||| ||| || Sbjct 162041 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCTTTAACGTTG 162100 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||| | || || || || ||||| | ||||| || Sbjct 162101 TCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTGACG 162160 Query 48756 AAAATCTGCATC 48767 || || |||||| Sbjct 162161 AAGATTTGCATC 162172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380521690423632