Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq876 96.9 3e-15
seq700 87.8 1e-12
seq640 86.0 5e-12
>seq876
Length=1913211
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | || | || || ||| ||| ||||||||||| |||||||
Sbjct 666166 CCACCCCTGAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATATTATAATCAGCA 666225
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| |||| | || || | ||||| |||||||| ||||| | ||| ||||||| ||||
Sbjct 666226 AGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGGGGA 666285
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||| || ||||| ||||| | | | || || |||||||
Sbjct 666286 ATGCCCTCCTTATCTTGGATCTTAGCCTTTACGTTGTCGATGGTGTCAGAGCTCTCCACC 666345
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | || || || || || || | || || || ||||||||||||
Sbjct 666346 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATC 666393
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | || | ||| || ||| || ||||| || ||||| |||||
Sbjct 530861 CCCCCTCTGAGGCGGAGAACGAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 530802
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| ||||| | || || | |||||| ||||| || |||| | ||| || |||| |||
Sbjct 530801 AGGGTTCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGG 530742
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||| || ||| ||| | | | || || |||||||
Sbjct 530741 ATGCCCTCCTTGTCTTGAATTTTGGATTTGACATTTTCGATCGTGTCAGAGCTCTCCACC 530682
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | ||| || || || || || | || || ||||| |||||||||
Sbjct 530681 TCAAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCATC 530634
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | ||| | ||||| || || || || |||||||||||||
Sbjct 666394 CCACCCCTAAGACGAAGCACAAGGTGTAGGGTAGATTCCTTCTGGATATTGTAATCAGCA 666453
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| |||| | || || | |||||| |||||||| ||||| | ||||||||||| ||
Sbjct 666454 AGGGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAGCCTCTGTTGATCCGGCGGG 666513
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| || || | | | || || |||||||
Sbjct 666514 ATGCCCTCCTTGTCCTGTATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCCACC 666573
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | || || || || || || | ||||| || || |||||||||
Sbjct 666574 TCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTGACGAAGATCTGCATC 666621
>seq700
Length=617226
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || ||||| || |||| |||| | || | || || | |||||| ||||| ||
Sbjct 335060 CTCCTTCTGGATATTATAGTCAGCTAGAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAA 335001
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || || || || |||| |||| ||| |||||||| ||||| || ||
Sbjct 335000 GATAAGGCGTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTT 334941
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | ||||||||||| || ||||| || ||||| | ||||||||
Sbjct 334940 GTCAATGGTGTCGGATGACTCCACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTTAC 334881
Query 48755 AAAAATCTGCATC 48767
|| |||||||||
Sbjct 334880 GAAGATCTGCATC 334868
>seq640
Length=221176
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || |||||||||||||| | || | || |||| || | |||||| || |||||
Sbjct 161981 TCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCAGCAAAG 162040
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|| | ||||| ||||| | |||| |||||||||||| |||||| ||| ||
Sbjct 162041 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCTTTAACGTTG 162100
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || || | ||||||||| | || || || || ||||| | ||||| ||
Sbjct 162101 TCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTGACG 162160
Query 48756 AAAATCTGCATC 48767
|| || ||||||
Sbjct 162161 AAGATTTGCATC 162172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380521690423632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |