Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq89584 618 5e-172 seq2 286 4e-72 seq374 282 5e-71 seq64191 223 4e-53 seq767 93.3 5e-14 >seq89584 Length=148959 Score = 618 bits (684), Expect = 5e-172 Identities = 733/990 (74%), Gaps = 10/990 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGT--TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGA 162559 || |||||| | ||| ||| ||| || || | || |||| ||||| ||||| |||| Sbjct 1134 TGCAACTGGATTACC--AGTACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGA 1077 Query 162560 TGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTC 162619 |||||||| || | | ||| | || || |||||||| |||||||| || |||| Sbjct 1076 TGATCCCTACTTTATTGACCGCAACTTCTGTATTTATCATTGCCTTCATTGCTGCCCCTC 1017 Query 162620 CAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACA 162679 |||| ||||| |||||||| | ||||||||| | || || || || ||||| ||||| | Sbjct 1016 CAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATA 957 Query 162680 TCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCT 162739 | ||||| ||||| | |||||| ||| ||||| ||| | || || || || || | Sbjct 956 TTATCTCAGGTGCCATTATTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAATAT 897 Query 162740 GGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCT 162799 ||||||||||| || ||||||||||||| || ||||| || |||| ||||| | || Sbjct 896 GGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTTATTGTTC 837 Query 162800 TCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCT 162859 | ||||| | | || | | ||| |||||| ||||||||||| || ||| Sbjct 836 TACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTC 777 Query 162860 TAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTG 162919 | |||||||| |||||||| ||||||||| || || || || | || || |||| Sbjct 776 TGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGCTG 717 Query 162920 TGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTT 162979 | |||||| |||| ||| | |||||||| ||||||||| | |||||| | || || | Sbjct 716 TTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATAT 657 Query 162980 CTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCT 163039 |||||||||| |||| |||| | || ||||| |||||||||||||| || ||||| || | Sbjct 656 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATTCTTATGCATCCAT 597 Query 163040 TCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTT 163099 | || ||| | || || || ||||||||||| ||||| || || ||||||||||| |||| Sbjct 596 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTT 537 Query 163100 CTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTT 163159 || | || |||||| | | ||||| ||||| ||||| | ||||| || | |||| Sbjct 536 CTTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTT 477 Query 163160 ATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTC 163219 | | || || ||||| ||||| || || || ||||| || |||||||| || ||||| | Sbjct 476 ACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCC 417 Query 163220 GCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTG 163279 | ||||||||||| ||||| ||||||||| || ||||| | || |||||| | |||| Sbjct 416 GATTGATCTTCCAATATGCTAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTG 357 Query 163280 CATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACC 163339 | | ||||| || | |||||||||||||| ||||| | |||||||| |||||| Sbjct 356 CTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACT 297 Query 163340 TTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTA 163396 | |||||||| || || ||||||||||| ||||| | |||| || || ||| | Sbjct 296 TGAACGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCGT---GTTATTAACA 240 Query 163397 CTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATG 163456 ||||||| |||||| | || | || |||||||||||||| ||||| || ||||||| Sbjct 239 CTTGGGCTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 163457 CTCACAACTTCCCACTTGACCTTGCTGCTG 163486 | ||||||||||| || || || ||| ||| Sbjct 179 CACACAACTTCCCTCTAGATCTAGCTTCTG 150 >seq2 Length=81761211 Score = 286 bits (316), Expect = 4e-72 Identities = 318/423 (75%), Gaps = 6/423 (1%) Strand=Plus/Plus Query 163067 TCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAG 163126 |||| ||||| || || ||||||||||| |||||| | || |||||| | | ||||| | Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGG 48005825 Query 163127 AAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTT 163186 |||| ||||| | ||||| || | ||||| | || || ||||| ||||| || | Sbjct 48005826 AAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCT 48005885 Query 163187 ACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCA 163246 | || ||||| || |||||||| || ||||| || ||||||||||| ||||| ||||| Sbjct 48005886 ATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCA 48005945 Query 163247 ACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCA 163306 |||| || ||||| | || |||||| | ||||| | ||||| || | |||||||||| Sbjct 48005946 ACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCA 48006005 Query 163307 CTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCG 163366 |||| ||||| | |||||||| |||||| | |||||||| || || |||||||||| Sbjct 48006006 CTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCG 48006065 Query 163367 TCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAG 163423 | ||||| | |||| || || ||| |||||||| |||||| | || | || Sbjct 48006066 TAGTTGATAGCCAAGGTCGT---GTTATTAACACTTGGGCTGATATCATAAATCGTGCTA 48006122 Query 163424 GACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTG 163483 |||||||||||||| ||||| || |||||||| ||||||||||| || || || ||| Sbjct 48006123 ATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTT 48006182 Query 163484 CTG 163486 ||| Sbjct 48006183 CTG 48006185 >seq374 Length=1248919 Score = 282 bits (312), Expect = 5e-71 Identities = 316/421 (75%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 163069 GGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAA 163128 || ||||| || || ||||||||||| |||||| | || |||||| | | ||||| ||| Sbjct 600774 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGGAA 600833 Query 163129 ACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTAC 163188 || ||||| | ||||| || | ||||| | || || ||||| ||||| || || Sbjct 600834 ACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTAT 600893 Query 163189 AACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAAC 163248 || ||||| || |||||||| || ||||| || ||||||||||| ||||| ||||||| Sbjct 600894 AATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC 600953 Query 163249 AACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACT 163308 || || ||||| | || |||||| | ||||| | ||||| || | |||||||||||| Sbjct 600954 AATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACT 601013 Query 163309 GCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTC 163368 || ||||| | |||||||| |||||| | |||||||| || || ||||||||||| Sbjct 601014 GCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTA 601073 Query 163369 GTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGA 163425 ||||| | |||| || || ||| |||||||| |||||| | || | || Sbjct 601074 GTTGATAGCCAAGGTCGT---GTTATTAACACTTGGGCTGATATCATAAATCGTGCTAAT 601130 Query 163426 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||||||||| ||||| || |||||||| ||||||||||| || || || ||| || Sbjct 601131 CTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCT 601190 Query 163486 G 163486 | Sbjct 601191 G 601191 >seq64191 Length=168564 Score = 223 bits (246), Expect = 4e-53 Identities = 346/490 (71%), Gaps = 6/490 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTT--GC-TTCA 162595 |||| || || ||| | |||||||||||| ||| | | | ||||||| || || | Sbjct 58596 TCGGATGATTTGGTATTTTGATGATCCCTA-CTTTATTGA--CCGCAACTTATGCATTTA 58652 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 ||||||| |||||||| || |||||| ||||| |||||||| | ||||||||| | | Sbjct 58653 TCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTATTCGTGAACCTGTTTCTG 58712 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTA 162715 | || || || ||||| ||||| || ||||| ||| | |||||| ||| |||| Sbjct 58713 GGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTATTCCTACTTCCGCAGCTA 58772 Query 162716 TTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATG 162775 | ||| | || || || || || ||||||| || | || ||||||||||||| || || Sbjct 58773 TAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTTGATGAGTGGTTATACAACA 58832 Query 162776 GTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTC 162835 || |||| ||||| | || | |||| | | || | | ||| |||| Sbjct 58833 ACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGTGTAGCTTGTTACATGGGTC 58892 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || ||||||||||| || ||| | |||||| | |||||||| ||||||||| || | Sbjct 58893 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTGCTGTTGCATATTCAG 58952 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | || || |||| | |||| |||| ||| | || ||||| ||||| Sbjct 58953 CTCCTGTTGCGGCTGCTACAACTGTTTACTTGATCTACCCTATTGGCCAAGGAAGTTTCT 59012 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||| ||| |||| |||| | || | ||| ||| Sbjct 59013 CTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTCATGATTGTATGCCAGTCAG 59072 Query 163016 AGCACAACAT 163025 |||||||||| Sbjct 59073 AGCACAACAT 59082 >seq767 Length=205183 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 ||| |||| || |||||||||||||| |||||||| | ||| ||||| | || | ||| Sbjct 188079 TTCCTTGCTGCCCCTCCAGTTGATATTGATGGTATTCGTGAATCTGTTTCTGGGTGTCTT 188138 Query 162664 --CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTC 162721 || ||||| |||||||| ||||| |||| | ||| || ||| ||||| ||| Sbjct 188139 TACTTTATGGAAACAACATTATCTCAGGTGTCATTATTCTTACTTCTGCAGCTATAGGTT 188198 Query 162722 TTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGT 162766 | | || || || || || |||||| || || || |||||||| Sbjct 188199 TGCTTTTTTACCCAATATGAGAAGCAACATCTGCTGTTGAGTGGT 188243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552465455640960