Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq89584 542 9e-150 seq64191 248 3e-61 seq374 190 6e-44 seq2 190 6e-44 seq767 80.6 8e-11 >seq89584 Length=148959 Score = 542 bits (600), Expect = 9e-150 Identities = 712/981 (73%), Gaps = 4/981 (0%) Strand=Plus/Plus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 ||||||| |||||| |||||||| || |||||||| || ||||| ||||| | ||||| Sbjct 152 GAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGA 211 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 ||||| | || | | |||||||| || | || | ||| ||| | || | Sbjct 212 TTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTG-GCTATCAACTAC 270 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||| || || || || || | || || |||||||| || |||| || || Sbjct 271 GGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGT 330 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||||||||||||||| | | | |||||| Sbjct 331 GAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTT 390 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 391 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATA 450 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| |||||| | || || | || ||||||| ||||| ||||| Sbjct 451 GGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 510 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | ||||| || | | || ||||||||| ||||| | || ||||| Sbjct 511 CCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 570 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || || || | ||| || || ||||||||||| || ||||| || || ||||| Sbjct 571 TACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCCTGGAA 630 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| || || | ||||||||||||||||||||| || Sbjct 631 TACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 690 Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAG 18429 ||| |||| ||| || | | ||||| || | ||||| || || || || ||||| | Sbjct 691 TTGACCAATAGGGTAGATCAAGAAA-ACAGCTGTAGCAGCCGCAACAGGAGCTGAATATG 749 Query 18430 CAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGT 18489 ||||| |||||| ||||||||||| || | ||||||||||||| | || ||||||| Sbjct 750 CAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 809 Query 18490 AAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATA 18549 || || | || | | |||||| | ||||| |||| ||| || || || || |||| Sbjct 810 AACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTGTATA 869 Query 18550 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 18609 ||||||| || | | ||| |||||||| |||||||| || || | ||| || || | Sbjct 870 ACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCGG 929 Query 18610 ATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAG 18669 | | || | || || ||||| || || ||||||||||| |||| | || || |||| Sbjct 930 AAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAG 989 Query 18670 GCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTG 18729 | |||||||||||||| || || || ||||| ||||||| || ||||| | |||| | | Sbjct 990 GTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAATACAG 1049 Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789 || |||||| || | | ||||||||| | || |||||||| || | ||| || |||| Sbjct 1050 AAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 1109 Query 18790 TGTTTGTACTCGTAACCCAGT 18810 | | ||||| |||| ||||| Sbjct 1110 TTTCAGTACTGGTAATCCAGT 1130 >seq64191 Length=168564 Score = 248 bits (274), Expect = 3e-61 Identities = 363/511 (71%), Gaps = 2/511 (0%) Strand=Plus/Minus Query 18291 ATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGC 18350 || ||||| || | ||| |||| | |||||| |||||| |||| || || | |||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 18351 ATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGC 18409 ||||||||||||||||| ||||| |||| ||| || | | || || || | ||||| Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAA-ACAGTTGTAGCAGC 58964 Query 18410 TGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAG 18469 || || || || ||||| |||||| |||||| |||| |||||| || | ||||||| Sbjct 58963 CGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAG 58904 Query 18470 TTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTG 18529 |||||| | || ||||||||| || | || | | ||||| | ||||| |||| Sbjct 58903 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTC 58844 Query 18530 ATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAA 18589 ||| || || ||| ||||||||||| || | | | | ||||||| |||||||| || Sbjct 58843 ATAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAA 58784 Query 18590 GTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATA 18649 || | ||| || || || | || | || | | ||| || || ||||||||||| Sbjct 58783 ATGCAAACCTATAGCTGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCATA 58724 Query 18650 GAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAAC 18709 |||| | || || ||||| |||||||||||||| || || | |||| ||||||| Sbjct 58723 AAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCAAT 58664 Query 18710 AAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAA 18769 || ||||| | |||||| || |||||| || | | ||||||||| | | ||||| Sbjct 58663 GAAGGCAATGATAAATGCATAAGTTGCGGTCAATAAAGTAGGGATCATCAAAATACCAAA 58604 Query 18770 CCACCCCACGTAGAGGCGGTTGTTTGTACTC 18800 || || | ||| || ||||| || ||| || Sbjct 58603 TCATCCGATGTAAAGACGGTTTTTGGTAATC 58573 >seq374 Length=1248919 Score = 190 bits (210), Expect = 6e-44 Identities = 288/407 (71%), Gaps = 2/407 (0%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 ||||||| |||||| |||||||| || |||||||| || ||||| ||||| | ||||| Sbjct 601189 GAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGA 601130 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 ||||| | || | | |||||||| || | || | ||| ||| | || | Sbjct 601129 TTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTG-GCTATCAACTAC 601071 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||| || || || || || | || || |||||||| || |||| || || Sbjct 601070 GGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGT 601011 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||||||||||||||| | | | |||||| Sbjct 601010 GAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTT 600951 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 600950 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATA 600891 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| |||||| | || || | || ||||||| ||||| ||||| Sbjct 600890 GGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 600831 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 18237 || || | ||||| || | | || ||||||||| ||||| Sbjct 600830 CCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATA 600784 >seq2 Length=81761211 Score = 190 bits (210), Expect = 6e-44 Identities = 288/407 (71%), Gaps = 2/407 (0%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 ||||||| |||||| |||||||| || |||||||| || ||||| ||||| | ||||| Sbjct 48006183 GAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGA 48006124 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 ||||| | || | | |||||||| || | || | ||| ||| | || | Sbjct 48006123 TTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTG-GCTATCAACTAC 48006065 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||| || || || || || | || || |||||||| || |||| || || Sbjct 48006064 GGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGT 48006005 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||||||||||||||| | | | |||||| Sbjct 48006004 GAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTT 48005945 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 48005944 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATA 48005885 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| |||||| | || || | || ||||||| ||||| ||||| Sbjct 48005884 GGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 48005825 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATA 18237 || || | ||||| || | | || ||||||||| ||||| Sbjct 48005824 CCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATA 48005778 Score = 104 bits (114), Expect = 7e-18 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 18405 GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAA 18464 ||||| || || || || ||||| |||||| |||||| ||| ||||||| | || Sbjct 22128664 GCAGCCGCAACAGGAGCTGAATATGCAACAACAATCCAAGGGTGCATACCCTGATGGAAA 22128605 Query 18465 CTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATG 18524 ||||||||||| | || ||||||||| || | || || | |||||| | ||||| Sbjct 22128604 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTAAAAAGTGTAGAACAATA 22128545 Query 18525 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 18584 | || ||| || || || || ||||||||||| || | | || |||||||| |||| | Sbjct 22128544 ATTTCATAAGGACCGCCATTGTATAACCACTCATCAATAGATGTTGCTTCCCATATTGAG 22128485 Query 18585 TA 18586 || Sbjct 22128484 TA 22128483 >seq767 Length=205183 Score = 80.6 bits (88), Expect = 8e-11 Identities = 103/141 (73%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 ||||| || |||||||| || | | ||| || || ||| | | | || | ||| Sbjct 188223 GCTTCTCATATTGGGTAAAAAAGCAAACCTATAGCTGCAGAAGTAAGAATAATGACACCT 188164 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCT--CCTGAGACAGGCTCACGAATACCATCTA 18687 || || |||||||||||||| ||||| | || || |||| |||||||||||||| | Sbjct 188163 GAGATAATGTTGTTTCCATAAAGTAAAGACACCCAGAAACAGATTCACGAATACCATCAA 188104 Query 18688 TGTCAACGGGAGGAGCAGCAA 18708 | ||||| ||||| ||||||| Sbjct 188103 TATCAACTGGAGGGGCAGCAA 188083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151157425972896