Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq89584 509 5e-140 seq374 235 2e-57 seq2 235 2e-57 seq64191 178 4e-40 >seq89584 Length=148959 Score = 509 bits (564), Expect = 5e-140 Identities = 708/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || || || || |||||||||||||| || || |||||||| || || | Sbjct 146 TCTACAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATA 205 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 ||||| || ||||| || | || |||||||| ||||| || || | || | | | Sbjct 206 CCAAGATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCA 265 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | ||||||||||| || ||||| ||||||||||| ||||| ||| | || | Sbjct 266 ACTACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAA 325 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| ||||| || |||||||| ||||| | |||||||| | ||||||| Sbjct 326 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAA 385 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||||||||||||||||| | || |||||||| || ||||| || |||||| Sbjct 386 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATA 445 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 || || || ||||||||||||||||| ||||||| | || || | | |||||| Sbjct 446 TTATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTG 505 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || || | || | || || |||| ||| ||||||||| ||| | || Sbjct 506 GTTTCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCG 565 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 || ||||| || || || || | ||||||||| |||||||||||||| |||||||| ||| Sbjct 566 CCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCC 625 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| ||||||| || || ||||| || || |||||| ||||||| ||| Sbjct 626 TGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAA 685 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || |||| || || | | ||| ||||| || ||||| || |||||||| || Sbjct 686 CTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCTGTAGCAGCCGCAACAGGAGCTGAA 745 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || |||||| ||||| || | ||| || || || | |||||||||||||| || ||| Sbjct 746 TATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 805 Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181 |||||| | || |||| | ||||| | || | |||| | |||||||| ||| Sbjct 806 ATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTG 865 Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241 || | ||| ||||||| | || |||||||| |||||||| || || | || || || Sbjct 866 TATAACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGC- 924 Query 22242 TTACTG--CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | | |||| | ||| ||||| || || ||||| ||||| | || || |||| Sbjct 925 -TGCGGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAG 983 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| ||||| || |||| Sbjct 984 AAACAGGTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAA 1043 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 | || || |||| ||| | | | || ||||| | || || |||||||| | ||| Sbjct 1044 ATACAGAAGTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCATCCGATGTAA 1102 Query 22419 AGACGGTTATTAGTAGAGGTGACCCAG 22445 |||||||| | |||| ||| | |||| Sbjct 1103 AGACGGTTTTCAGTACTGGTAATCCAG 1129 >seq374 Length=1248919 Score = 235 bits (260), Expect = 2e-57 Identities = 253/335 (76%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || || || || |||||||||||||| || || |||||||| || || | Sbjct 601195 TCTACAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATA 601136 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 ||||| || ||||| || | || |||||||| ||||| || || | || | | | Sbjct 601135 CCAAGATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCA 601076 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | ||||||||||| || ||||| ||||||||||| ||||| ||| | || | Sbjct 601075 ACTACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAA 601016 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| ||||| || |||||||| ||||| | |||||||| | ||||||| Sbjct 601015 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAA 600956 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||||||||||||||||| | || |||||||| || ||||| || |||||| Sbjct 600955 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATA 600896 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 || || || ||||||||||||||||| ||||||| Sbjct 600895 TTATAGGTTTCTTCCTCTTGACCAAATCTGTAACC 600861 >seq2 Length=81761211 Score = 235 bits (260), Expect = 2e-57 Identities = 253/335 (76%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || || || || |||||||||||||| || || |||||||| || || | Sbjct 48006189 TCTACAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATA 48006130 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 ||||| || ||||| || | || |||||||| ||||| || || | || | | | Sbjct 48006129 CCAAGATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCA 48006070 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | ||||||||||| || ||||| ||||||||||| ||||| ||| | || | Sbjct 48006069 ACTACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAA 48006010 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| ||||| || |||||||| ||||| | |||||||| | ||||||| Sbjct 48006009 GCAGTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAA 48005950 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||||||||||||||||| | || |||||||| || ||||| || |||||| Sbjct 48005949 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATA 48005890 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 || || || ||||||||||||||||| ||||||| Sbjct 48005889 TTATAGGTTTCTTCCTCTTGACCAAATCTGTAACC 48005855 Score = 95.1 bits (104), Expect = 4e-15 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 22038 GTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT-CCCTAGTCG 22096 || ||||| || |||||||| || || ||||||| ||||| || ||| |||| | | Sbjct 22128667 GTAGCAGCCGCAACAGGAGCTGAATATGCAACAACAATCCAAGGGTGCATACCCTGATGG 22128608 Query 22097 ATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATAC 22156 | | |||||||||||||| || ||||||||| | || ||||| | ||||| | || Sbjct 22128607 AAA-CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTAAAAAGTGTAGAAC 22128549 Query 22157 GGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAAT 22216 | | || | |||||||| ||||| | ||| ||||||| | | |||||||| || Sbjct 22128548 AATAATTTCATAAGGACCGCCATTGTATAACCACTCATCAATAGATGTTGCTTCCCATAT 22128489 Query 22217 TGGGTA 22222 || ||| Sbjct 22128488 TGAGTA 22128483 >seq64191 Length=168564 Score = 178 bits (196), Expect = 4e-40 Identities = 353/514 (69%), Gaps = 14/514 (3%) Strand=Plus/Minus Query 21927 ATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGC 21986 || |||||||| | |||| | || | |||| ||||||| | || ||||| || || ||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 21987 ATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAA-CAAGGAACACAGCAGTCGCAGC 22045 ||| ||||||| ||| || || |||| || || | |||| || |||| || ||||| Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAA-ACAGTTGTAGCAGC 58964 Query 22046 GGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAG 22105 || |||||||| || || |||||| ||||| || | ||| || || || | ||||| Sbjct 58963 CGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAG 58904 Query 22106 TTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTG 22165 ||||||||| || ||||||||| | || |||| | |||| | || | |||| Sbjct 58903 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTC 58844 Query 22166 GAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAA 22225 | |||||| |||||| | ||| ||||||| | | ||||||| |||||||| || Sbjct 58843 ATAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAA 58784 Query 22226 GTGTAGTCCGATGGCATTACTG--CTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283 || | || || || | | | | |||| | | | | ||| || || ||||| ||| Sbjct 58783 ATGCAAACCTATAGC--TGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCA 58726 Query 22284 TACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCA 22343 || | || || |||| || ||||| || || ||||| || || | || | || || Sbjct 58725 TAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCA 58666 Query 22344 ACAAAGGCGATAATAAA---ACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGAC 22399 | ||||| || ||||| | ||||| |||| ||| | | | || ||||| | | Sbjct 58665 ATGAAGGCAATGATAAATGCATAAGTT---GCGGTCAATAAAGTA-GGGATCATCAAAAT 58610 Query 22400 TCCGAACCATCCTACATAAAGACGGTTATTAGTA 22433 || || ||||| | ||||||||||| || ||| Sbjct 58609 ACCAAATCATCCGATGTAAAGACGGTTTTTGGTA 58576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146052462467520