Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq91 107 2e-18 seq293 98.7 1e-15 seq36 96.9 4e-15 >seq2 Length=81761211 Score = 134 bits (148), Expect = 2e-26 Identities = 337/508 (66%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATT-GTGGATTTTCTCA 175249 |||||||| ||| |||| | || |||| | | || | | | | ||||| ||||| | Sbjct 31019193 TGATGTTGCTGGGGTTGATGAAGC-AAAGCAGGATTTCATGGAAGTAGTGGAGTTTCTTA 31019135 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 || |||| || || | | || ||||| || || ||| | |||||| | Sbjct 31019134 AGAAACCAGAAAGGTTTACTGCTGTCGGTGCTCGTATACCTAAAGGTGTTCTTCTCATTG 31019075 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || || ||||| |||||||| || || ||| ||||| || |||||| | ||| | Sbjct 31019074 GTCCTCCTGGTACTGGAAAGACTCTACTTGCCAAGGCCATTGCTGGTGAAGCTGGTGTTC 31019015 Query 175370 CATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 | || || ||| | | | ||||||||||||||||||||||| || ||| | Sbjct 31019014 CCTTTTTCTCTATCTCAGGATCTGAGTTTGTGGAGATGTTTGTTGGTGTTGGCGCCTCAC 31018955 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 ||||||| ||||| || | | || || ||| ||| |||||||| ||| |||||| Sbjct 31018954 GGGTTCGTGATCTTTTCAAGAAGGCTAAAGAGAATGCACCTTGTATTGTATTCGTTGATG 31018895 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAG 175549 | |||||||| || || | |||||| | | ||| | | ||||| || |||| Sbjct 31018894 AAATTGATGCTGTTGGAAGGCAACGAGGAACGGGTATTGGAGGGGGGAATGATGAAAGAG 31018835 Query 175550 AACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTG 175609 ||||||| | || || || | || || |||||||| ||||| | || || || Sbjct 31018834 AACAAACTCTGAACCAGCTTTTGACTGAAATGGATGGTTTTGAAGGAAATACAGGTATCA 31018775 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTC 175669 | ||| |||| || ||||| |||| || ||||| ||| ||| | || | || || Sbjct 31018774 TAGTTCTTGCAGCTACTAACCGCGCAGACATCCTGGATTCCGCTTTGCTAAGGCCTGGAA 31018715 Query 175670 GTTTTGATCGCAAGATCCAAGTGGGTCT 175697 | |||||| ||| || |||||||| Sbjct 31018714 GGTTTGAT----AGA--CAGGTGGGTCT 31018693 >seq91 Length=344896 Score = 107 bits (118), Expect = 2e-18 Identities = 250/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 175222 GAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCC 175281 || ||| |||| | || |||||| | ||| | || || | ||| | |||||| Sbjct 231539 GAGCTTCAAGAAGTCGTCGATTTTTTGAAGAATCCTGATAAATACACGGCTCTTGGTGCT 231598 Query 175282 AAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCC 175341 ||||| ||| ||| |||| | | || ||| || || || ||||| || || || Sbjct 231599 AAGATTCCCAAAGGTTGCCTTTTGGTTGGGCCGCCGGGAACTGGGAAGACGCTGCTAGCT 231658 Query 175342 CGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTG 175401 || || |||| || || | ||| || ||| | ||| |||| || | ||||| Sbjct 231659 CGGGCGGTCGCCGGCGAGGCTGGTGTGCCCTTCTTTTCGTGTGCTGCTTCAGAGTTTGTT 231718 Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCC--GCG 175459 || | |||||||| || || || |||||| | ||| | ||||| | || ||| Sbjct 231719 GAACTTTTTGTTGGAGTTGGAGCTTCAAGGGTGAGGGATTTGTTTGAGAAGGCAAAGGCG 231778 Query 175460 AAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCG 175519 ||| || |||||||| || ||||| |||||||||||||| || | ||| | | | Sbjct 231779 AAAGCT--CCCTGTATTGTTTTTATTGACGAGATTGATGCGGTTGGAAGGCAGAGAGGGG 231836 Query 175520 CTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCG 175576 |||| |||| | ||||| ||||||||||| || |||||||| || | || | Sbjct 231837 CTGGGCTTGGTGGT---GGTAATGATGAGAGAGAACAGACCATTAATCAGCTCTTGACTG 231893 Query 175577 AGATGGATGGCTTT 175590 |||||||||| ||| Sbjct 231894 AGATGGATGGATTT 231907 >seq293 Length=413263 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| |||| ||||| || | | ||||| | |||||| || ||| ||||| Sbjct 226865 GCCATCGAAACCGTACCCTGCGTCGCCCGTAAGGCTCAGTGGGCACTGCGCTGGATTGAC 226924 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | ||| || || || ||||| || | || |||||||| || || ||||| ||| Sbjct 226925 GCC---TCTGAATCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTC 226981 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||||| || | ||| | |||||||| ||| | |||||||| || Sbjct 226982 TTCTCCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTC 227041 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || || || || || ||||| |||||| || ||||| Sbjct 227042 ACTTTTTCTAACGAGCTCATCTCTCGTGACGAGGGACTCCACTGCGACTTTGC 227094 >seq36 Length=6822877 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || ||||| || |||| ||||| || || ||||| ||||||||||| || Sbjct 1783766 TCTTTTGCAGAGCGAATTCTTGCATTTGCTTGCGTTGAGGGCATCTTCTTCTCTGGTAGT 1783707 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| |||||||| | || || ||||| || || || || || Sbjct 1783706 TTCTGCGCCATCTTCTGGCTGAAGAAGAGAGGGCTAATGCCTGGTCTCACTTTTTCCAAC 1783647 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || |||||||| || |||||||| || ||| || ||||| Sbjct 1783646 GAGCTTATTTCTCGTGATGAGGGCCTGCACTGTGACTTTGC 1783606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595901561361920