Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq89584 571 7e-158 seq2 264 1e-65 seq374 260 2e-64 seq64191 188 9e-43 >seq89584 Length=148959 Score = 571 bits (632), Expect = 7e-158 Identities = 724/991 (73%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| |||| |||| ||||||||||||||||| | ||||||||| ||||||||||| | Sbjct 150 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 || || | |||| | ||| |||| || ||| | ||| | |||||| | Sbjct 210 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACTA 269 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 | ||||||||||| ||||| ||||| | ||| || ||||| || | |||||||| || || Sbjct 270 CGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAG 329 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG-AAG--ACTTCTACTGT 8122 | ||||| | || || || || | | ||| | |||||| || ||| || | ||| Sbjct 330 TGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGT 389 Query 8123 TGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATAT 8182 || |||| | ||||| |||||||| |||| ||||| || |||||||| || ||||||| Sbjct 390 TG--AAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATAT 446 Query 8183 TATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTG 8242 ||||||| ||||| ||||||||||| | ||||| | || |||||| | |||||| | Sbjct 447 TATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGG 506 Query 8243 TCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCAC 8302 | || ||||||| | ||| || || |||||||| |||||||||||||| || || || | Sbjct 507 TTTCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGC 566 Query 8303 CGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTT 8362 |||| | ||| ||||| ||| ||| || || ||||||||||||||||| |||||||| | Sbjct 567 CGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCCT 626 Query 8363 GGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATG 8422 ||||||| | ||||||||| || |||||||| || |||| |||||| ||||||||||| Sbjct 627 GGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAAC 686 Query 8423 AACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTAT 8482 || ||||||| || || | ||||| || || |||||| | || ||||| || Sbjct 687 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCTGTAGCAGCCGCAACAGGAGCTGAAT 746 Query 8483 ATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCA 8542 |||| ||| ||||| || | |||||| | ||| | | ||||||| | ||||| Sbjct 747 ATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 806 Query 8543 TGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTAT 8602 ||||| || | |||| | ||||| | | || | | ||| ||||| || || | Sbjct 807 TGTAACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTGT 866 Query 8603 ACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGT 8662 | ||||||||||| | | || |||||||| || || || || || || || ||||| Sbjct 867 ATAACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTG 926 Query 8663 TGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAA 8722 ||||| |||| | ||||| ||||| || ||||||||||| | | || || | || Sbjct 927 CGGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAA 986 Query 8723 CAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGC 8782 |||||||||||||||| || |||||||| || || |||||||| || || | |||||| Sbjct 987 CAGGTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAATA 1046 Query 8783 AAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTC 8842 || || || | || || ||| ||||| | ||| |||||||| |||| ||||| | Sbjct 1047 CAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGAC 1106 Query 8843 TGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 ||| | ||||| |||| ||| | ||| || Sbjct 1107 GGTTTTCAGTACTGGTAATCCAGTTGCAGAA 1137 >seq2 Length=81761211 Score = 264 bits (292), Expect = 1e-65 Identities = 315/423 (74%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| |||| |||| ||||||||||||||||| | ||||||||| ||||||||||| | Sbjct 48006185 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 48006126 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 || || | |||| | ||| |||| || ||| | ||| | |||||| | Sbjct 48006125 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACTA 48006066 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 | ||||||||||| ||||| ||||| | ||| || ||||| || | |||||||| || || Sbjct 48006065 CGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAG 48006006 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG-AAG--ACTTCTACTGT 8122 | ||||| | || || || || | | ||| | |||||| || ||| || | ||| Sbjct 48006005 TGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGT 48005946 Query 8123 TGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATAT 8182 || |||| | ||||| |||||||| |||| ||||| || |||||||| || ||||||| Sbjct 48005945 TG--AAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATAT 48005889 Query 8183 TATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTG 8242 ||||||| ||||| ||||||||||| | ||||| | || |||||| | |||||| | Sbjct 48005888 TATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGG 48005829 Query 8243 TCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCAC 8302 | || ||||||| | ||| || || |||||||| |||||||||||||| || || || | Sbjct 48005828 TTTCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGC 48005769 Query 8303 CGA 8305 ||| Sbjct 48005768 CGA 48005766 >seq374 Length=1248919 Score = 260 bits (288), Expect = 2e-64 Identities = 313/421 (74%), Gaps = 6/421 (1%) Strand=Plus/Minus Query 7886 CAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTA 7945 |||| |||| |||| ||||||||||||||||| | ||||||||| ||||||||||| | Sbjct 601191 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 601132 Query 7946 AGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAA 8005 || || | |||| | ||| |||| || ||| | ||| | |||||| | Sbjct 601131 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACCTTGGCTATCAACTA 601072 Query 8006 CTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAG 8065 | ||||||||||| ||||| ||||| | ||| || ||||| || | |||||||| || || Sbjct 601071 CGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAG 601012 Query 8066 TTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG-AAG--ACTTCTACTGT 8122 | ||||| | || || || || | | ||| | |||||| || ||| || | ||| Sbjct 601011 TGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGT 600952 Query 8123 TGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATAT 8182 || |||| | ||||| |||||||| |||| ||||| || |||||||| || ||||||| Sbjct 600951 TG--AAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATAT 600895 Query 8183 TATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTG 8242 ||||||| ||||| ||||||||||| | ||||| | || |||||| | |||||| | Sbjct 600894 TATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGG 600835 Query 8243 TCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCAC 8302 | || ||||||| | ||| || || |||||||| |||||||||||||| || || || | Sbjct 600834 TTTCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGC 600775 Query 8303 C 8303 | Sbjct 600774 C 600774 >seq64191 Length=168564 Score = 188 bits (208), Expect = 9e-43 Identities = 346/507 (68%), Gaps = 0/507 (0%) Strand=Plus/Minus Query 8347 ATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGC 8406 ||||| ||||||| ||| |||| | ||||||||| || ||||||| || |||| |||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 8407 ATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCA 8466 || ||||||||||| || || |||| || || | ||| | || | |||||| Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAAACAGTTGTAGCAGCC 58963 Query 8467 GATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAAC 8526 | || ||||| |||||| ||| ||||| || | |||||| | ||| | | Sbjct 58962 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAGT 58903 Query 8527 TCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGA 8586 ||||||| | |||||||||| || | |||| | |||| | | || | | | Sbjct 58902 TCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTCA 58843 Query 8587 TATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAG 8646 || ||||| ||| || ||||||||||| | | | ||||||| || || || || Sbjct 58842 TAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAAA 58783 Query 8647 TGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATAC 8706 || || || ||||| ||||| |||| | ||| ||||| || ||||||||||| Sbjct 58782 TGCAAACCTATAGCTGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCATAA 58723 Query 8707 ATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATA 8766 | | || || | |||||||||||||||||| || |||||| | || | |||||||| Sbjct 58722 AGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCAATG 58663 Query 8767 AATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAAC 8826 || || | |||||| | || || | || || ||| ||||| | || ||||| Sbjct 58662 AAGGCAATGATAAATGCATAAGTTGCGGTCAATAAAGTAGGGATCATCAAAATACCAAAT 58603 Query 8827 CAACCGACATAAAGTCTGTTGTTTGTA 8853 || |||| ||||| | ||| || ||| Sbjct 58602 CATCCGATGTAAAGACGGTTTTTGGTA 58576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615172757284480