Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq89584 553 4e-153 seq374 264 3e-66 seq2 264 3e-66 seq64191 185 2e-42 seq767 93.3 1e-14 >seq89584 Length=148959 Score = 553 bits (612), Expect = 4e-153 Identities = 730/1005 (73%), Gaps = 8/1005 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | || ||| | ||||||||||| | || |||||| Sbjct 1146 TGGGGTCGCTTCTGCAACTGGATTACCAGTACTGAAAACCGTCTTTACATCGGATGGTTT 1087 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| ||||| | || ||||| Sbjct 1086 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATCATTGCCTTCAT 1028 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||||||||| || || |||||||| |||||||||||||| ||||| ||||| || || Sbjct 1027 TGCTGCCCCTCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTA 968 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAG--CAGTAACGCAATTGGACTACAT 42516 ||| ||||| || ||||| |||||| | | |||| | | | || || || | ||| Sbjct 967 TGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCCGCA--GCTATAGGTTTGCAT 910 Query 42517 TTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTAT 42576 || || | || |||||||| | |||| || ||| | ||||||||||| |||||| Sbjct 909 TTTTACCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTAT 850 Query 42577 CAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAA 42636 | || | || | ||||| | | ||| | | |||| |||| || || |||||| Sbjct 849 GAACTTATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 790 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCT 42696 ||| | ||| || || ||| | || ||||| |||||| || || || ||||| || Sbjct 789 CTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCG 730 Query 42697 GCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATG 42756 || || || || || ||| | |||| || |||| ||||| ||| || ||||| ||| Sbjct 729 GCTGCTACAGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATG 670 Query 42757 CCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATT 42816 ||| | || || || ||||| |||||||||||| | || |||||||| || || |||||| Sbjct 669 CCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATT 610 Query 42817 CTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCA 42876 ||||||||||| || || ||| | || || || || ||||| || || || | ||| Sbjct 609 CTTATGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGT 550 Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936 |||||||||||| | | || || ||| | | | | ||||| |||||||| || Sbjct 549 GCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCT 490 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| | || |||| || ||||||||||| || || ||||| ||||| || || ||| Sbjct 489 GCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCAT 430 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCA 43055 ||||| ||||| || | |||||||||||||| | |||| || ||| || || ||||| Sbjct 429 GGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCCCGTTCCTTGCA 371 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 ||||| | || |||||||| || ||||| || ||||||||| || | || | ||||| Sbjct 370 TTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTAC 311 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCA 43175 ||||||||| |||||||| |||||||| ||||||||||| | ||||||| || || Sbjct 310 TATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCG 251 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| || |||||||||||||| | |||||||| || ||||| | || || ||||| Sbjct 250 TGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCA 191 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGA 43280 || || |||||||| |||||||| || ||||| || || || || Sbjct 190 TGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCTGTAGA 146 >seq374 Length=1248919 Score = 264 bits (292), Expect = 3e-66 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936 |||||||||||| | | || || ||| | | | | ||||| |||||||| || Sbjct 600792 GCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCT 600851 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| | || |||| || ||||||||||| || || ||||| ||||| || || ||| Sbjct 600852 GCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCAT 600911 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCA 43055 ||||| ||||| || | |||||||||||||| | |||| || ||| || || ||||| Sbjct 600912 GGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCCCGTTCCTTGCA 600970 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 ||||| | || |||||||| || ||||| || ||||||||| || | || | ||||| Sbjct 600971 TTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTAC 601030 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCA 43175 ||||||||| |||||||| |||||||| ||||||||||| | ||||||| || || Sbjct 601031 TATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCG 601090 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| || |||||||||||||| | |||||||| || ||||| | || || ||||| Sbjct 601091 TGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCA 601150 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGA 43280 || || |||||||| |||||||| || ||||| || || || || Sbjct 601151 TGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCTGTAGA 601195 >seq2 Length=81761211 Score = 264 bits (292), Expect = 3e-66 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936 |||||||||||| | | || || ||| | | | | ||||| |||||||| || Sbjct 48005786 GCTATGCATGGTTCTTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCT 48005845 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| | || |||| || ||||||||||| || || ||||| ||||| || || ||| Sbjct 48005846 GCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCAT 48005905 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCA 43055 ||||| ||||| || | |||||||||||||| | |||| || ||| || || ||||| Sbjct 48005906 GGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCCCGTTCCTTGCA 48005964 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 ||||| | || |||||||| || ||||| || ||||||||| || | || | ||||| Sbjct 48005965 TTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTAC 48006024 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCA 43175 ||||||||| |||||||| |||||||| ||||||||||| | ||||||| || || Sbjct 48006025 TATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCG 48006084 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| || |||||||||||||| | |||||||| || ||||| | || || ||||| Sbjct 48006085 TGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCA 48006144 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGA 43280 || || |||||||| |||||||| || ||||| || || || || Sbjct 48006145 TGAACGTAATGCACACAACTTCCCTCTAGATCTAGCTTCTGTAGA 48006189 >seq64191 Length=168564 Score = 185 bits (204), Expect = 2e-42 Identities = 349/509 (69%), Gaps = 6/509 (1%) Strand=Plus/Plus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 || || ||||||||||| | || || |||||| | ||||||| || | | | | Sbjct 58577 ACCAAAAACCGTCTTTACATCGGATGATTTGGTATTTTGATGATCCCTACTTTATTGACC 58636 Query 42370 GCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATT 42429 || || ||||| | || |||||||||||| |||| | || |||||||| ||| Sbjct 58637 GCAACTTATGCATTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTATT 58696 Query 42430 CGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTG 42489 ||||||||||| ||||| ||||| || ||||| ||||| || ||||| ||| | | | Sbjct 58697 CGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTATT 58756 Query 42490 CCTAG--CAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTG 42547 |||| | | | || || || | ||||| || | || ||||||| | | ||| Sbjct 58757 CCTACTTCCGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTTG 58814 Query 42548 ACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTA 42607 | || ||| | ||||| ||| |||||| | || | || | |||| | | ||| Sbjct 58815 ATGAGTGGTTATACAACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGTG 58874 Query 42608 TCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGA 42667 | | |||| |||| || || ||||||||| | ||| || || ||| | || |||| Sbjct 58875 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGA 58934 Query 42668 TCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTG-TCTATCCA 42726 | |||||| || || || ||||| || || || || | || || |||| |||| || Sbjct 58935 TTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAACTGT-TTACTTGATCTACCCT 58993 Query 42727 TTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTC 42786 |||| ||||| ||| || ||||| |||||| | || || || |||| ||||||||| Sbjct 58994 ATTGGCCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTC 59053 Query 42787 ATGTTGGTCTTCCAGGCTGAACATAACAT 42815 ||| | || | |||| | || || ||||| Sbjct 59054 ATGATTGTATGCCAGTCAGAGCACAACAT 59082 >seq767 Length=205183 Score = 93.3 bits (102), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 42394 TTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTT 42453 ||| ||||||||||||| || || |||||||| ||||||||| |||| ||||| | |||| Sbjct 188079 TTCCTTGCTGCCCCTCCAGTTGATATTGATGGTATTCGTGAATCTGTTTCTGGGTGTCTT 188138 Query 42454 --CTGTATGGCAACAACATCATCTCTGGTG 42481 || ||||| |||||||| ||||| |||| Sbjct 188139 TACTTTATGGAAACAACATTATCTCAGGTG 188168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143380108372032