Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq89584 459 8e-125 seq2 188 2e-43 seq374 187 7e-43 seq64191 159 1e-34 >seq89584 Length=148959 Score = 459 bits (508), Expect = 8e-125 Identities = 698/982 (71%), Gaps = 10/982 (1%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||| || || || ||||| || |||||||| || ||||| ||||| | || || Sbjct 152 GAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGA 211 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTAC 25992 ||||| || |||| | ||||||||| || | || || | | || | ||| ||||| Sbjct 212 TTAGCACGATTTATGATATCAGCCCAAGT-GTTAATAACACGACCTTGGCTATCAACTAC 270 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 || |||||||| |||||||| || | ||| || ||||| || | ||||||| || || Sbjct 271 GGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGT 330 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | ||| || || || || ||||||| ||| | |||||||| | |||||| || || Sbjct 331 GAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTT 390 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 ||||| ||||| || || || |||| ||||| || || || || || ||||||||||| Sbjct 391 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATA 450 Query 26173 TGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC 26232 || ||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 451 GGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 510 Query 26233 --TGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCG 26290 || | ||| || |||| |||||| || ||||||||| ||| || | || ||| Sbjct 511 CCTG-ATTAAACTAG-AAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCG 568 Query 26291 AAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGG 26350 || || ||||| || || ||| || ||||| ||||| || || || || ||||| ||| Sbjct 569 AATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCCTGG 628 Query 26351 AATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTC 26410 ||||| | ||| ||||| ||||||||||| || || | |||||| |||||| ||||| Sbjct 629 AATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTT 688 Query 26411 CCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATAT 26470 ||||| || | ||| || | ||||| || || ||| || | | || |||| |||| Sbjct 689 CCTTGACCAATAGGGTAGATCAAGAAAACAGCTGTAGCAGCCGCAACAGGAGCTGAATAT 748 Query 26471 GCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCA 26530 |||||| ||||| || | ||| || || | | || |||||||||| | || Sbjct 749 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATG 808 Query 26531 TATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 || ||||| || | ||| ||||| | | ||| |||| ||| || |||||||||||| Sbjct 809 TAACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTGTAT 868 Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650 | |||||| || | | | |||||||| || ||||||||||| | || || || Sbjct 869 AACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCG 928 Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710 || | || | | || ||||| || ||||||||||| || | || || || ||||| Sbjct 929 GAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAACA 988 Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACA 26769 || ||||| || ||||| ||||| || || || || || |||||||||| ||||| ||| Sbjct 989 GGTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAATACA 1048 Query 26770 TGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGAC 26828 | ||| || | | | ||| |||| ||||| | || || |||||||| | || |||| Sbjct 1049 -GAAGTTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCGATGTAAAGAC 1106 Query 26829 GGTTCTCAGTACTTGTAACCCA 26850 |||| |||||||| |||| ||| Sbjct 1107 GGTTTTCAGTACTGGTAATCCA 1128 >seq2 Length=81761211 Score = 188 bits (208), Expect = 2e-43 Identities = 298/421 (71%), Gaps = 6/421 (1%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||| || || || ||||| || |||||||| || ||||| ||||| | || || Sbjct 48006183 GAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGA 48006124 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTAC 25992 ||||| || |||| | ||||||||| || | || || | | || | ||| ||||| Sbjct 48006123 TTAGCACGATTTATGATATCAGCCCAAGT-GTTAATAACACGACCTTGGCTATCAACTAC 48006065 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 || |||||||| |||||||| || | ||| || ||||| || | ||||||| || || Sbjct 48006064 GGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGT 48006005 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | ||| || || || || ||||||| ||| | |||||||| | |||||| || || Sbjct 48006004 GAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTT 48005945 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 ||||| ||||| || || || |||| ||||| || || || || || ||||||||||| Sbjct 48005944 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATA 48005885 Query 26173 TGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTT- 26231 || ||||| ||||| ||||| | || || | ||| || | | || || |||| Sbjct 48005884 GGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 48005825 Query 26232 -CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCG 26290 ||| | ||| | ||||| |||||| || ||||||||| ||| || | || ||| Sbjct 48005824 CCTG-ATTAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCG 48005767 Query 26291 A 26291 | Sbjct 48005766 A 48005766 >seq374 Length=1248919 Score = 187 bits (206), Expect = 7e-43 Identities = 291/410 (71%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||| || || || ||||| || |||||||| || ||||| ||||| | || || Sbjct 601189 GAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAAGA 601130 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTAC 25992 ||||| || |||| | ||||||||| || | || || | | || | ||| ||||| Sbjct 601129 TTAGCACGATTTATGATATCAGCCCAAGT-GTTAATAACACGACCTTGGCTATCAACTAC 601071 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 || |||||||| |||||||| || | ||| || ||||| || | ||||||| || || Sbjct 601070 GGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCAGT 601011 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | ||| || || || || ||||||| ||| | |||||||| | |||||| || || Sbjct 601010 GAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAATTGTT 600951 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 ||||| ||||| || || || |||| ||||| || || || || || ||||||||||| Sbjct 600950 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATA 600891 Query 26173 TGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTT- 26231 || ||||| ||||| ||||| | || || | ||| || | | || || |||| Sbjct 600890 GGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 600831 Query 26232 -CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAG 26280 ||| | ||| | ||||| |||||| || ||||||||| ||| || Sbjct 600830 CCTG-ATTAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTGAATAG 600783 >seq64191 Length=168564 Score = 159 bits (176), Expect = 1e-34 Identities = 344/506 (68%), Gaps = 10/506 (2%) Strand=Plus/Minus Query 26332 TATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGG 26391 ||| || || |||| ||| |||| | ||| ||||| ||| ||||||| || || | ||| Sbjct 59083 TATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGG 59024 Query 26392 CATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGC 26451 ||| |||||| ||||| ||||| || | ||| || | ||| | || | ||| || Sbjct 59023 CATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAAACAGTTGTAGCAGC 58964 Query 26452 GGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAG 26511 | | || |||| |||||||||| ||||| || | ||| || || | | || || Sbjct 58963 CGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAG 58904 Query 26512 TTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTG 26571 |||||||| | || || ||||| || | ||| |||| | | ||| |||| Sbjct 58903 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTC 58844 Query 26572 ATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAA 26631 ||| || ||| ||||||| |||||| || | | | ||||||| || |||||||| Sbjct 58843 ATAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAA 58784 Query 26632 ATGTAGTCCGATTGCGTTAGAGGAGG--GGACGACTG-CTCCTGATATTATATTGTTTCC 26688 ||| | || || || | ||| | ||| | || | | ||| || ||||||||||| Sbjct 58783 ATGCAAACCTATAGCT---GCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCC 58727 Query 26689 GTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGC 26748 || | || || || ||||| || ||||| || ||||| ||||| | || | || || Sbjct 58726 ATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGC 58667 Query 26749 GATGAAGGCAAGTATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGCACC 26806 |||||||||| ||||| ||| ||| || | | | ||| |||| ||||| | | Sbjct 58666 AATGAAGGCAATGATAAATGCAT-AAGTTGCGGTCAATAAAGTAGGG-ATCATCAAAATA 58609 Query 26807 CCGAACCATCCCACATAGAGACGGTT 26832 || || ||||| | || |||||||| Sbjct 58608 CCAAATCATCCGATGTAAAGACGGTT 58583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147554862497280