Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq89584 491 1e-134 seq64191 199 1e-46 seq374 188 2e-43 seq2 188 2e-43 >seq89584 Length=148959 Score = 491 bits (544), Expect = 1e-134 Identities = 711/994 (72%), Gaps = 12/994 (1%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||||| |||||||| |||||||| || ||||| || ||||||||||||||||| | Sbjct 150 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACT 40646 || | | || | | |||||||||||| ||| || ||| || || || ||| Sbjct 210 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACC-TTGGCTATCAACT 268 Query 40647 ACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAG 40706 || || |||||||| |||||||| || | ||| || ||||||||| ||||||| | Sbjct 269 ACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCA 328 Query 40707 GTAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATT 40765 || | ||| || || | || || ||||| ||||||| ||| || | | |||| ||| Sbjct 329 GTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAA-GAAATGCAAGGAACGGGAATT 387 Query 40766 GTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTT 40825 |||||| ||||||||| || || | || ||||| ||||| || || ||||| || || Sbjct 388 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATT 447 Query 40826 ATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGT 40885 ||| || || | || |||||||| | || || | || || ||| |||| ||||| Sbjct 448 ATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGT 507 Query 40886 CTCCCGAATGATTGAG---GAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 |||| ||||| | ||||| || | || ||||||||| || | | ||| Sbjct 508 TTCCC---TGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACC 564 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || ||||| | ||| || ||||| ||||| ||||||||||| ||||| Sbjct 565 GCCGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGC 624 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| |||||||||||| || ||| |||||||||||||||||||||||||| Sbjct 625 CTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAA 684 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | || || | ||||| |||||| ||| || | | ||||||| Sbjct 685 ACTTCCTTGACCAATAGGGTAGATCAAGAAAACAGCTGTAGCAGCCGCAACAGGAGCTGA 744 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 745 ATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 804 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 ||| ||||| || | ||||||||| | ||||| |||| ||| || ||||| || Sbjct 805 CATGTAACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATT 864 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||| |||||| || | | | |||||||| |||||||| ||||| | || || || Sbjct 865 GTATAACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGC 924 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 || | |||| | || || || ||||||||||| || || | || || || || Sbjct 925 TGCGGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGA 984 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| ||||| || || || || || || ||||| || || || Sbjct 985 AACAGGTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAA 1044 Query 41423 -ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATA 41481 ||| | || || || | ||| | || ||||| | ||||||||||| || | ||| | Sbjct 1045 TACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCGATGTAAA 1103 Query 41482 GGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||| || || || || | |||||| || || Sbjct 1104 GACGGTTTTCAGTACTGGTAATCCAGTTGCAGAA 1137 >seq64191 Length=168564 Score = 199 bits (220), Expect = 1e-46 Identities = 350/507 (69%), Gaps = 2/507 (0%) Strand=Plus/Minus Query 40989 ATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGC 41048 |||||||| |||| ||| | |||| |||||||||||| | ||| |||||||||||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 41049 ATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCT 41108 ||||||||||||||| || || || | || || | ||| | |||| | ||| || Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAAACAGTTGTAGCAGCC 58963 Query 41109 GACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGT 41168 | | ||||||| ||||| ||| ||||| || | |||||| || | | | |||| Sbjct 58962 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAGT 58903 Query 41169 TCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGA 41228 ||||||| | ||| ||| ||||| || | |||||||| | ||||| |||| | Sbjct 58902 TCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTCA 58843 Query 41229 TATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAA 41288 || || ||| |||||||| |||||| || | | | ||||||| |||||||| ||| Sbjct 58842 TAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAAA 58783 Query 41289 TGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTAC 41348 || | || || || || | |||| | | | || ||||||||||| || || Sbjct 58782 TGCAAACCTATAGCTGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCATAA 58723 Query 41349 ATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATA 41408 | || || || ||||| || ||||| || ||||| ||||| | || | || || || Sbjct 58722 AGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCAATG 58663 Query 41409 AAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAA 41467 ||||| || || || ||| || || || | ||| | || ||||| | | |||||| Sbjct 58662 AAGGCAATGATAAATGCAT-AAGTTGCGGTCAATAAAGTAGGGATCATCAAAATACCAAA 58604 Query 41468 CCAACCTACGTATAGGCGGTTGTCGGT 41494 || || | ||| || ||||| | ||| Sbjct 58603 TCATCCGATGTAAAGACGGTTTTTGGT 58577 >seq374 Length=1248919 Score = 188 bits (208), Expect = 2e-43 Identities = 264/365 (72%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||||| |||||||| |||||||| || ||||| || ||||||||||||||||| | Sbjct 601191 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 601132 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACT 40646 || | | || | | |||||||||||| ||| || ||| || || || ||| Sbjct 601131 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACC-TTGGCTATCAACT 601073 Query 40647 ACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAG 40706 || || |||||||| |||||||| || | ||| || ||||||||| ||||||| | Sbjct 601072 ACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCA 601013 Query 40707 GTAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATT 40765 || | ||| || || | || || ||||| ||||| ||||| || | | |||| ||| Sbjct 601012 GTGAACCAGATACCCACTACAGGCCAAGCAGCCAAG-AAGAAATGCAAGGAACGGGAATT 600954 Query 40766 GTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTT 40825 |||||| ||||||||| || || | || ||||| ||||| || || ||||| || || Sbjct 600953 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATT 600894 Query 40826 ATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGT 40885 ||| || || | || |||||||| | || || | || || ||| |||| ||||| Sbjct 600893 ATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGT 600834 Query 40886 CTCCC 40890 |||| Sbjct 600833 TTCCC 600829 >seq2 Length=81761211 Score = 188 bits (208), Expect = 2e-43 Identities = 264/365 (72%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||||||||| |||||||| |||||||| || ||||| || ||||||||||||||||| | Sbjct 48006185 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 48006126 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACT 40646 || | | || | | |||||||||||| ||| || ||| || || || ||| Sbjct 48006125 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAACACGACC-TTGGCTATCAACT 48006067 Query 40647 ACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAG 40706 || || |||||||| |||||||| || | ||| || ||||||||| ||||||| | Sbjct 48006066 ACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAGCA 48006007 Query 40707 GTAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATT 40765 || | ||| || || | || || ||||| ||||| ||||| || | | |||| ||| Sbjct 48006006 GTGAACCAGATACCCACTACAGGCCAAGCAGCCAAG-AAGAAATGCAAGGAACGGGAATT 48005948 Query 40766 GTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTT 40825 |||||| ||||||||| || || | || ||||| ||||| || || ||||| || || Sbjct 48005947 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATT 48005888 Query 40826 ATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGT 40885 ||| || || | || |||||||| | || || | || || ||| |||| ||||| Sbjct 48005887 ATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGGT 48005828 Query 40886 CTCCC 40890 |||| Sbjct 48005827 TTCCC 48005823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143549527949856