Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq89584 587 9e-163 seq2 259 5e-64 seq374 255 7e-63 seq64191 205 1e-47 >seq89584 Length=148959 Score = 587 bits (650), Expect = 9e-163 Identities = 726/990 (73%), Gaps = 10/990 (1%) Strand=Plus/Plus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||| ||| || || |||||||||||||| || ||||| || ||||| |||||||| |||| Sbjct 150 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | || | ||| || |||||||| ||| || || |||| | |||| Sbjct 210 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAAC---ACGACCTTGGCTATCAA 266 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | ||||||||||| || || |||||||| | |||||| |||||||| | ||||| | Sbjct 267 CTACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAG 326 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGT 67593 ||||||||||||| | || ||||| | ||||| | |||||| || | | || | Sbjct 327 CAGTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAAT 386 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||||||| ||||| ||||||||||| || || || || |||||||| || ||||| | Sbjct 387 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATAT 446 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | || || ||||| ||||| || || ||||||| | || ||||| | ||||| | Sbjct 447 TATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGG 506 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | |||||| || | |||||| ||||||||||| || || ||||| | Sbjct 507 TTTCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGC 566 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||||||||| ||||| || | ||| || ||||| |||||||| |||||||||||||| | Sbjct 567 CGAATACACCAGCTACGCCTAACATGTGAAATGGATGCATAAGAATGTTGTGCTCTGCCT 626 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 |||| || | |||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 627 GGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAAC 686 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||| | ||| |||| |||||| ||||| || || | || ||||| || | Sbjct 687 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCTGTAGCAGCCGCAACAGGAGCTGAAT 746 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCAC 68013 |||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 747 ATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 806 Query 68014 AGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTAT 68073 ||| | | || | | ||||| | || | ||||| |||| || ||||| | Sbjct 807 TGTAACAAGCTACACCAAGTAAAAAGTGTAGAACAATAAGTTCATAAGGACCGCCATTGT 866 Query 68074 ACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGT 68133 | ||||||||||| | || |||||||||||| || || || || || | ||| || || Sbjct 867 ATAACCACTCATCAACAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTG 926 Query 68134 TTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAA 68193 ||| |||||| || ||||| || || || ||||| || || | || || || | || Sbjct 927 CGGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGACCCAGAAA 986 Query 68194 CAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGC 68253 ||||||| | |||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 987 CAGGTTCACGAATACCATCAATATCGACTGGAGGGGCAGCAATGAAGGCAATGATAAATA 1046 Query 68254 AAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGC 68313 || | ||| | | || ||| |||||||| ||||| ||||| || | || | | Sbjct 1047 CAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGAC 1106 Query 68314 GATTGTCA--ACTGAGGTGACCCAGTTACA 68341 | || ||| ||| ||| | |||||| || Sbjct 1107 GGTTTTCAGTACT--GGTAATCCAGTTGCA 1134 >seq2 Length=81761211 Score = 259 bits (286), Expect = 5e-64 Identities = 312/423 (74%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||| ||| || || |||||||||||||| || ||||| || ||||| |||||||| |||| Sbjct 48006185 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 48006126 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | || | ||| || |||||||| ||| || || |||| | |||| Sbjct 48006125 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAAC---ACGACCTTGGCTATCAA 48006069 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | ||||||||||| || || |||||||| | |||||| |||||||| | ||||| | Sbjct 48006068 CTACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAG 48006009 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGT 67593 ||||||||||||| | || ||||| | ||||| | |||||| || | | || | Sbjct 48006008 CAGTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAAT 48005949 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||||||| ||||| ||||||||||| || || || || |||||||| || ||||| | Sbjct 48005948 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATAT 48005889 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | || || ||||| ||||| || || ||||||| | || ||||| | ||||| | Sbjct 48005888 TATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGG 48005829 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | |||||| || | |||||| ||||||||||| || || ||||| | Sbjct 48005828 TTTCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGC 48005769 Query 67774 CGA 67776 ||| Sbjct 48005768 CGA 48005766 >seq374 Length=1248919 Score = 255 bits (282), Expect = 7e-63 Identities = 310/421 (74%), Gaps = 6/421 (1%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||| ||| || || |||||||||||||| || ||||| || ||||| |||||||| |||| Sbjct 601191 CAGAAGCTAGATCTAGAGGGAAGTTGTGTGCATTACGTTCATGCATTACTTCCATACCAA 601132 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | || | ||| || |||||||| ||| || || |||| | |||| Sbjct 601131 GATTAGCACGATTTATGATATCAGCCCAAGTGTTAATAAC---ACGACCTTGGCTATCAA 601075 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | ||||||||||| || || |||||||| | |||||| |||||||| | ||||| | Sbjct 601074 CTACGGATTGGTTAAAATTAAAACCGTTCAAGTTGAACGCCATAGTACTAATACCCAAAG 601015 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGT 67593 ||||||||||||| | || ||||| | ||||| | |||||| || | | || | Sbjct 601014 CAGTGAACCAGATACCCACTACAGGCCAAGCAGCCAAGAAGAAATGCAAGGAACGGGAAT 600955 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||||||| ||||| ||||||||||| || || || || |||||||| || ||||| | Sbjct 600954 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATAT 600895 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | || || ||||| ||||| || || ||||||| | || ||||| | ||||| | Sbjct 600894 TATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGACTCATTTTCAGTGG 600835 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | |||||| || | |||||| ||||||||||| || || ||||| | Sbjct 600834 TTTCCCTGATTAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGC 600775 Query 67774 C 67774 | Sbjct 600774 C 600774 >seq64191 Length=168564 Score = 205 bits (226), Expect = 1e-47 Identities = 341/488 (70%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 67818 ATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGC 67877 ||||||||||||| ||| | || | |||| |||| ||| ||||||| || || | |||| Sbjct 59082 ATGTTGTGCTCTGACTGGCATACAATCATGAAGTTGAAATTACCAGATATTCCTAAAGGC 59023 Query 67878 ATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCA 67937 || | ||||||||| ||||| || | ||| |||| |||| | |||| || || Sbjct 59022 ATACCATCAGAGAAACTTCCTTGGCCAATAGGGTAGATCAAGTAAACAGTTGTAGCAGCC 58963 Query 67938 GACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGT 67997 | || ||||| || ||||| ||| |||||||| | |||||| |||||| || |||| Sbjct 58962 GCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCACATACCCAGACGGAAACTAAGT 58903 Query 67998 TCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGG 68057 ||||||| |||||| ||| | | || | | |||| | || | ||||| Sbjct 58902 TCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTATAGAACAATAAGTTCA 58843 Query 68058 AAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAG 68117 |||| || || || ||||||||||| | || | || ||||||| || || || || Sbjct 58842 TAAGGACCGTTGTTGTATAACCACTCATCAACAGATTCTACTTCCCATATTGGGTAAAAA 58783 Query 68118 TGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAC 68177 || | ||| || || ||| |||||| || ||| || || || ||||| || || Sbjct 58782 TGCAAACCTATAGCTGCGGAAGTAGGAATAATGACACTTGAGATAATATTGTTTCCATAA 58723 Query 68178 ATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATG 68237 | || || || | ||||||||| | |||||||| ||||| |||||| || |||||| Sbjct 58722 AGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCGGCTGGAGAGGCAGCAATG 58663 Query 68238 AATGCAATGATGAA-GC--AAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCG 68294 || |||||||| || || ||||||| | | | ||| ||| |||||||| | ||| Sbjct 58662 AAGGCAATGATAAATGCATAAGTTGCGG--TCAATAAAG-TAGGGATCATCAAAATACCA 58606 Query 68295 AACCAACC 68302 || || || Sbjct 58605 AATCATCC 58598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566312332525440