Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq202 109 1e-18
seq258 91.5 3e-13
>seq202
Length=4793652
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || || ||||| || || | ||| | |||| ||| || ||| |||||||||
Sbjct 4328799 ATACCTCCCCTGAGTCGCAACACAAGATGGAGGGTAGACTCCTTCTGAATGTTATAATCT 4328740
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || | || || | || || |||||||||||||| ||||| ||||| ||
Sbjct 4328739 GCAAGTGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCCGGA 4328680
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| || || || || || ||||| ||| || || || ||
Sbjct 4328679 GGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCA 4328620
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| || || |||||||||| || || | || ||||||||
Sbjct 4328619 ACTTCAAGAGTGATCGTCTTACCAGTTAGGGTCTTCACAAAAATCTGCAT 4328570
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || | || | ||| | ||||| || || |||||| || ||
Sbjct 4329350 ATGCCACCACGAAGACGGAGCACAAGATGAAGAGTAGATTCCTTCTGAATATTGTAGTCC 4329291
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || | || || | || |||||||||||||| | | ||| ||||| |||
Sbjct 4329290 GCAAGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAAATGAGGCGCTGCTGGTCCGGT 4329231
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || |||||||| |||||| || ||||| ||||| || || ||
Sbjct 4329230 GGAATCCCCTCCTTATCTTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTCTCA 4329171
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| || || || || || ||||| | ||||| | |||||||||||
Sbjct 4329170 ACTTCAAGTGTGATTGTCTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 4329121
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932
|||| |||||| ||| ||||| || | || | || | || || | ||||| |||
Sbjct 4082854 GTAGACTCTTTCTGAATGTTATAGTCAGCCAAGGTGCGGCCATCCTCAAGCTGTTTCCCA 4082795
Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992
|||||||| || ||||| ||||| || || |||||||| ||||| || || || ||
Sbjct 4082794 GCAAAAATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTATCCTGGATCTTGGCCTTG 4082735
Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052
|| || || ||||| || ||| || || || ||||| || || || || | ||
Sbjct 4082734 ACGTTGTCAATGGTATCAGAACTTTCGACCTCAAGTGTAATTGTCTTGCCTGTAAGGGTC 4082675
Query 172053 TTAATGAATATCTGCAT 172069
|||| || ||||||||
Sbjct 4082674 TTAACAAAAATCTGCAT 4082658
>seq258
Length=1945713
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
|||| | ||||||||||| | || |||||||| | ||| | ||| || ||| || |
Sbjct 1660566 TCATTGTTCCACCTCTAAGCCTCAAAACTAAATGGAGAGTTGACTCCTTCTGAATGTTGT 1660507
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
|||||| ||| | || | || || || ||||| ||||||||||| || | ||||| |
Sbjct 1660506 AATCTGCTAAGGTCCGACCATCTTCTAACTGTTTCCCAGCAAAAATCAAACGTTGTTGAT 1660447
Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979
||||||| || ||||| || || ||
Sbjct 1660446 CAGGTGGAATGCCTTCCTTGTCCTG 1660422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904122428707200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |