Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq293 174 2e-37 seq36 154 2e-31 >seq293 Length=413263 Score = 174 bits (192), Expect = 2e-37 Identities = 221/299 (74%), Gaps = 9/299 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| |||||||||||||||||||| || || || | | |||| | | ||| Sbjct 226797 GAGTGAATGTTTTCGATGGCGATCTGGAAGCCATAGAAAGCGCGCGCCTCCGGAAGTTGA 226738 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||| || ||||| |||||||| |||||| || || |||||||| Sbjct 226737 ACCTCTCGCATGAAGCGTCCGGCGAGGTTCTCCAGCACGATACCATCAGAAGCGGCGAAG 226678 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTG- 869808 || |||||||||| ||||||||||||||||||| | |||| | |||| || Sbjct 226677 AAGGCCAGGACGTAGGTGATAAAGTGGCGCTCGTCAGAGGTGAGGGTGTGATCCCATTGC 226618 Query 869809 -GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 || || | | ||| || ||||| || || ||||||| |||||||| || || | Sbjct 226617 CGAACGTCTTG--TGAGAGATCGACCTCTTCCGCAGTCCAGAAAGAGGCCTCTGCTTTCT 226560 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 ||||||||||||| | || |||||||||| ||||| | ||| ||||| | |||||| Sbjct 226559 TGTACATCTCCCAAATCTGAGGGTAGCGGATCGGGAACA-TACAGAAGCGATCGGGGTT 226502 Score = 122 bits (134), Expect = 1e-21 Identities = 187/266 (70%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | ||||| ||| | ||| || ||||| | ||||||||| Sbjct 227076 CCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCTGGCATCAAACCGCGCTTC 227017 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| ||||| ||||| || || || |||||| ||||| Sbjct 227016 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATACCTTCGACGCACGCAAAA 226957 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTC-GAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | |||||| ||||| | || ||||| || ||||| || ||||| Sbjct 226956 GCGAGAATCCGCTCAGCAAATGATTCAGAGGC-------GTCAATCCAGCGCAGTGCCCA 226904 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 | ||||| || | || || || |||||||||||||| || | | ||||| Sbjct 226903 CTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGCGCGAAAAAGATTGGATTTTTC 226844 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGA 869444 || | |||||||| ||||| |||| Sbjct 226843 GGTGGAGTCCTTGATGTAGGTCTCGA 226818 >seq36 Length=6822877 Score = 154 bits (170), Expect = 2e-31 Identities = 211/290 (73%), Gaps = 5/290 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| |||||||||||||| || || || || || | | |||| | | || Sbjct 1783903 GAGTGGATGTTTTCGATGGCGATCTGAAATCCATAGAAAGCGCGCGCCTCCGGGAGCTGT 1783962 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| |||||| ||||| || |||||||| ||||| |||||| |||||||| Sbjct 1783963 ACCTCCCGCATGAAGCGGCCAGCGAGGTTCTCTAGAACGATTCCGTCGGAAGCGGCGAAG 1784022 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGA--CA-CCCAGTGG 869809 ||||| || ||||| | | || || || |||||| | |||| || || ||||||| Sbjct 1784023 AAAGCGAGAACGTGGGTTACGAAATGCCGTTCGTCGGAGGTGAGGGATTCATTCCAGTGG 1784082 Query 869810 ACGGTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| | || | || || || || || || ||||||| ||||| ||||| || || Sbjct 1784083 -CGGAGATCTTGGGACAGATCAACTTCTTCTGCTGTCCAGAAAGAGGCTTCGGCTTTCTT 1784141 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918 |||||||||||| | || |||||||||| || || | | ||||||| Sbjct 1784142 GTACATCTCCCAGATCTGAGGGTAGCGGATCGGAAACATGCAGAAGCGGT 1784191 Score = 93.3 bits (102), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| ||| | ||| || ||||| || || | |||||| ||||| |||||||||||| Sbjct 1783645 TCGTTGGAAAAAGTGAGACCAGGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAG 1783704 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAA 869319 ||||| || ||||| ||||||||||| ||| ||||| | | | ||||| ||||| Sbjct 1783705 AAACTACCAGAGAAGAAGATGCCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAA 1783763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6099787517438128