Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq293 170 3e-36 seq36 154 2e-31 seq203 104 4e-16 seq30 91.5 2e-12 >seq293 Length=413263 Score = 170 bits (188), Expect = 3e-36 Identities = 235/327 (72%), Gaps = 9/327 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | ||||| ||| ||| || ||||| | ||||||||| Sbjct 227076 CCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCTGGCATCAAACCGCGCTTC 227017 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||||| ||||| || || || |||||| ||||| Sbjct 227016 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATACCTTCGACGCACGCAAAA 226957 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCC-AGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| | |||||| ||||| | || |||| || ||||| || ||||| Sbjct 226956 GCGAGAATCCGCTCAGCAAATGATTCAGAGGC-------GTCAATCCAGCGCAGTGCCCA 226904 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| || |||| || || |||||||||||||| || | | || || Sbjct 226903 CTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGCGCGAAAAAGATTGGATTTTTC 226844 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | |||||||| |||||| |||| ||| || || |||| ||||| |||||||| Sbjct 226843 GGTGGAGTCCTTGATGTAGGTCTCGAGGAGAAGACTATACATCTCGGAGTGAATGTTTTC 226784 Query 794640 GATGGCGATCTGGAAGCCATA-AAAGC 794665 ||||||||||||||||||||| ||||| Sbjct 226783 GATGGCGATCTGGAAGCCATAGAAAGC 226757 Score = 163 bits (180), Expect = 4e-34 Identities = 190/254 (75%), Gaps = 7/254 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || | ||| ||||| ||||||||| ||||| |||||||| |||||| || Sbjct 226752 GCCTCCGGAAGTTGAACCTCTCGCATGAAGCGTCCGGCGAGGTTCTCCAGCACGATACCA 226693 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| ||||| ||||||| |||||||||| |||||||| | |||| Sbjct 226692 TCAGAAGCGGCGAAGAAGGCCAGGACGTAGGTGATAAAGTGGCGCTCGTCAGAGGTGAGG 226633 Query 796270 GAGA---CCCAGTG--GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGG 796324 | | |||| || || ||| | | ||| |||||||| || || ||||| || | Sbjct 226632 GTGTGATCCCATTGCCGAACGTCTTGTGA--GAGATCGACCTCTTCCGCAGTCCAGAAAG 226575 Query 796325 AGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAA 796384 ||||||| || || |||||||||||||| ||| | |||||||||| ||||||| | | Sbjct 226574 AGGCCTCTGCTTTCTTGTACATCTCCCAAATCTGAGGGTAGCGGATCGGGAACATACAGA 226515 Query 796385 AGCGATTGGGGTTC 796398 |||||| ||||||| Sbjct 226514 AGCGATCGGGGTTC 226501 >seq36 Length=6822877 Score = 154 bits (170), Expect = 2e-31 Identities = 219/306 (72%), Gaps = 9/306 (3%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||| ||| ||| || ||||| || || | |||||| ||||| |||||||| ||| Sbjct 1783645 TCGTTGGAAAAAGTGAGACCAGGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAG 1783704 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAA 794481 ||||| || ||||| ||||||||||| ||| ||||| | | | ||||| |||||| Sbjct 1783705 AAACTACCAGAGAAGAAGATGCCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAA 1783764 Query 794482 GTGTCC-AGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGA 794540 | || |||| || |||||| | ||||||| |||||| || | Sbjct 1783765 GAATCGGAGGC-------GTCGATCCAGCGGAGAGCCCACTGTGCCTTGCGGGCGACGCA 1783817 Query 794541 GGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGT 794600 ||| || || ||||| || | |||||||| ||||| | | ||| |||| |||||| Sbjct 1783818 GGGAACGGTCTCGATAGCATGGAAGAGGTGCGATTTCTCTGCGGAGTCTTTGATGTAGGT 1783877 Query 794601 GTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA 794660 |||| || || ||| |||| |||||||||||||||||||||||||| || ||||| Sbjct 1783878 TTCGAGAAGCAGGCTGTACATCTCGGAGTGGATGTTTTCGATGGCGATCTGAAATCCATA 1783937 Query 794661 -AAAGC 794665 ||||| Sbjct 1783938 GAAAGC 1783943 Score = 123 bits (136), Expect = 4e-22 Identities = 169/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || | || |||||| |||||||||||| || |||||||| ||||| ||| Sbjct 1783948 GCCTCCGGGAGCTGTACCTCCCGCATGAAGCGGCCAGCGAGGTTCTCTAGAACGATTCCG 1784007 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||| || ||||| ||||| | | || || || |||||| | |||| Sbjct 1784008 TCGGAAGCGGCGAAGAAAGCGAGAACGTGGGTTACGAAATGCCGTTCGTCGGAGGTGAGG 1784067 Query 796270 GAGAC---CCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 || | ||||||| | | | || | || || || || || || ||||| || || Sbjct 1784068 GATTCATTCCAGTGG-CGGAGATCTTGGGACAGATCAACTTCTTCTGCTGTCCAGAAAGA 1784126 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| ||||| || |||||||||||||| ||| | |||||||||| || |||| Sbjct 1784127 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGGTAGCGGATCGGAAACA 1784179 >seq203 Length=2940243 Score = 104 bits (114), Expect = 4e-16 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || ||||| || || || || | || || || ||| | | Sbjct 1082661 TGAACTTGGTAACCGCCTTAGTGCCCTCCGACACCGCATGTTTTGCAAGCTCTCCGGGAA 1082720 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 | || || |||| |||||||||||||||| ||| || || |||| |||||| Sbjct 1082721 GAACCAAACGAACGGAAGTCTGGATCTCGCGGGAAGTGATGGT--TG-GCTTCTTAGTGT 1082777 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGG-TCGATCATGTCGTTGACAAACGAG 1485645 || || ||||| || ||| ||| | || || | || ||||||| |||||| Sbjct 1082778 ATCGAGCAAGGCGTGAGGACTCC-TGCGCAAGCTTCTCAAAGATATCGTTGATGAACGAG 1082836 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||||| ||| | ||||| || | || |||||||||||||| | |||| Sbjct 1082837 TTCATGATGCTCATCGCCTTGCTTGAGATACCGATATCAGGGTGCACCTGCTTCAACACC 1082896 Query 1485706 TTG 1485708 ||| Sbjct 1082897 TTG 1082899 >seq30 Length=1380778 Score = 91.5 bits (100), Expect = 2e-12 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || || |||||||||||||| || ||||| ||| | || ||||| || | | | Sbjct 290068 ACTTAGTAACAGCCTTGGTACCCTCAGAAACGGCATGCTTAGCAAGTTCACCAGGAAGAA 290009 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTGCGC 1485591 ||||| || | ||||||||||| | || | ||| || | || |||| ||| || Sbjct 290008 CGAGGCGAACCGAAGTCTGGATCTCCCTGGAGGTGATTGT-TAGCTGCTTATTATAACGA 289950 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || ||||| |||||| | | | |||| || ||||| | |||||||||||| Sbjct 289949 GCGAGGCGAGAGGCCTCATGGGCTAGCTTCTCGAATATATCGTTAATGAACGAGTTCATG 289890 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 || ||||| ||| | ||||| || | || || || |||||||| Sbjct 289889 ATGCTCATCGCCTTGCTCGAGATTCCGATATCTGGATGGACCTGCTT 289843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7906716941327376