Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq89584 98.7 4e-16 seq513 86.0 2e-12 seq2 84.2 8e-12 >seq89584 Length=148959 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38215 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38274 Query 50170 CTGCTCTACTCCGC 50183 |||||||||||||| Sbjct 38275 CTGCTCTACTCCGC 38288 >seq513 Length=923960 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 50115 GGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACTGCT 50174 |||| | ||||||||||||| | |||||||| |||||||| |||||||||| ||||||| Sbjct 370172 GGAGACAGGATTTGAACCCGTGACCTCCAGGTCATGAGCCTTGCGAGCTACCAAACTGCT 370113 Query 50175 CTACTCCGCA 50184 ||||||| || Sbjct 370112 CTACTCCACA 370103 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||| ||||||||| | |||| ||| ||||||||| || ||||||| ||| Sbjct 367866 TTGCGGAGATAGGACTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCAAGCTACCAAAC 367925 Query 50171 TGCTCTACTCCGC 50183 ||||||||||||| Sbjct 367926 TGCTCTACTCCGC 367938 >seq2 Length=81761211 Score = 84.2 bits (92), Expect = 8e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | || | ||| ||||| ||| |||||||||| || Sbjct 40804023 GTTGCGGAGACAGGATTTGAACCCGTGACCCCAAGGTTATGAACCTTGCGAGCTACCAAA 40803964 Query 50170 CTGCTCTACTC 50180 ||||||||||| Sbjct 40803963 CTGCTCTACTC 40803953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181410008699808