Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq277 260 1e-63 seq101 197 1e-44 seq62680 118 8e-21 seq140 114 1e-19 seq2 98.7 7e-15 seq203 93.3 3e-13 >seq277 Length=589295 Score = 260 bits (288), Expect = 1e-63 Identities = 716/1078 (66%), Gaps = 28/1078 (3%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 |||| |||||| | |||| ||||| ||||||||||| ||||| | || || || Sbjct 413258 GTTGTTTTATCCTCAGCAGAAACATTCAGAATACCATTAGCATCAATGTCGAAGCAAACA 413317 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 ||| ||||| || || || |||||||||| || || | | |||| | || || Sbjct 413318 GTAATCTGAGGAACACCCCTGGGAGCAGGTGGTATGCCAGAGAGCTCAAATTTGCCGAGC 413377 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||| || || | || | | ||||| || | | ||||| || ||| Sbjct 413378 AGATTGTTGTCCCTTGTTCTAGTCCTCTCACCTTCATATACCTGGATCAAGACACCAGGC 413437 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 281649 ||||| ||||| || || | || || ||| || || ||| || || ||||| || Sbjct 413438 TGATTGTCTGAGTAGGTCGAGAAGAC-CTGCTCCTTCTTGGTAGGGATGGTGGTGTTCCT 413496 Query 281650 ATCAAT-AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 281708 ||| || | || |||| | ||||||||| || || | ||||||||| |||||||| | Sbjct 413497 TGGAATCAAGACTG-TCATGACACCACCAGCAGTCTCGAGACCAAGAGAGAGAGGAGTCA 413555 Query 281709 CATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTT 281768 |||| | |||| | | |||| || || | | ||| | ||| || |||| Sbjct 413556 CATCGAGCAGGAGGAGGTCCTGAACCTTCTCGTTGCCCTCACCGCTCAAAATGGCAGCTT 413615 Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTT 281826 | | ||| |||||||| |||||||| ||||| ||||| | | || || || | || Sbjct 413616 GGACAGCGGCACCATAGGCAACAGCCTCATCGGGATTGATGCTCTTGCAG--AGCTCCTT 413673 Query 281827 ACCATTGAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAA 281885 |||||||| || | || || | | || ||||| ||||| | || |||||||||| Sbjct 413674 CCCATTGAAGAAGTCCTGCAACA-GCTGCTGCACCTTTGGAATCCTAGTGGATCCTCCAA 413732 Query 281886 CTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCA 281944 | || || | ||||| || ||| | ||||||| |||| |||| || || || Sbjct 413733 CCAAAACCACATCATGAACA-GTGCTCTTATCCATCTTTGCATCCCTCAAGCACTTCTCC 413791 Query 281945 ACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTA 282004 || ||||| | | || || | || ||| || ||||| | || | ||| Sbjct 413792 ACAGGTTCCATGCACTTCCTGAATAGATCCATGTTAAGCTCCTCGAACCTGGCACGAGTG 413851 Query 282005 AGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC 282064 | ||| | ||||||| || ||| | | |||||||| ||| || || ||||||| Sbjct 413852 ATGGTGGTGTAGAAATCAATGCCCTCGTATAGAGAATCAATTTCGATGGTGGTTTGAGCA 413911 Query 282065 GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTT 282123 | |||||||| | | || || | |||||| || ||||| | ||| | |||| ||| | Sbjct 413912 GTCGAAGATAGAGTTCTCTTTGCTCTTTCACAAGCAGTCCTCAATCTCC-TAAGAGCTCT 413970 Query 282124 TGCTGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT 282181 | ||||| | | | |||| | |||| ||| ||||| || || | |||| | | Sbjct 413971 GG--GATTGTTGCTGATATCTTTCTTATTTTTCCTCTTAAATTCCTGAACAAAGTGGTTA 414028 Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || | ||||| |||||||| ||||| || | | ||| | ||||| || || | ||| Sbjct 414029 ACCATGCGATTGTCAAAATCCTCACCACCAAGATGAGTGTCTCCTGCAGTTGCCTTGACT 414088 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | |||| || ||||| | | | |||| ||||| || ||||| |||| || Sbjct 414089 TCAAAAATACCCTCTTCGATGGTGAGGAGAGAGACATCGAAAGTCCCACCGCCCAAGTCG 414148 Query 282302 AAAATAAGTACATTCATTTCTT---TGTCTTGG-----TTTTTATCAAGACCATACGCAA 282353 ||||| || ||||| ||||| | ||| ||||| ||||| ||||| || | Sbjct 414149 AAAATGAGAACATT--TTTCTCACCTACGCTGGAAGCCTTTTTGTCAAGGCCATAGGCGA 414206 Query 282354 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 282413 ||||||||||| || ||||| || ||||||| |||||||||||| ||||| || | Sbjct 414207 TGGCAGCAGCAGTCGGCTCATTGATTATTCTCATAACATTAAGACCGGCAATGACACCAG 414266 Query 282414 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 |||| || |||||||| | || || || || || ||||| |||||||| | ||| || Sbjct 414267 CATCCTTTGTGGCTTGGCGCTGCGAGTCATTGAAGTATGCGGGAACAGTGACAACAGC 414324 Score = 93.3 bits (102), Expect = 3e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||| | ||||| | || | |||| ||||| ||||| || ||||| Sbjct 420111 CAAAGACGGTGTTGATGGGATTCATAGCGACCTGATTCTTGGCAGCATCGCCGATCAGCC 420170 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 | || || || || || | |||||| || || || || || |||||||| || || || | Sbjct 420171 GCTCGGTGTCGGTGAACGCAACATACGACGGGGTCGTACGGTTACCTTGGTCGTTTGCGA 420230 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || | | | |||||||| || || ||| | ||||| |||| ||||| Sbjct 420231 TGATTTCGACCCGATCGTGCTGCCATACTCCGACGCAAGAGTACGTTGTACCTAGATCAA 420290 Query 282870 TACCAATAGCA 282880 ||||||| ||| Sbjct 420291 TACCAATCGCA 420301 >seq101 Length=418085 Score = 197 bits (218), Expect = 1e-44 Identities = 545/824 (66%), Gaps = 30/824 (4%) Strand=Plus/Plus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||| || || || || |||||||| || || || || | | | | Sbjct 197862 GTCATGACACCACCAGCAGTCTCCAAGCCTAGAGAAAGCGGGGTTACGTCCAGCAATAGA 197921 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || |||| || || |||||||||||||| | ||||||||| Sbjct 197922 AGATCCTGCACCTTCTCATTGCCTTCCCCGCTCAGAATAGCTGCTTGGACTGCAGCACCA 197981 Query 281783 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 || |||||||| ||||| ||||||| | || || || | || |||||||| |||| Sbjct 197982 TAAGCAACAGCCTCATCCGGATTAATGCTCTTGCAG--AGCTCCTTTCCATTGAAGAAAT 198039 Query 281841 TTGAAAGAAGTTGTCTTA-CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | ||| | || || | || ||||||| || | ||||| |||| ||| Sbjct 198040 CTTGAAGCAACTG-CTGATCCCTAGGAATTCGGGTGGATCC----------ACAACATCA 198088 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 || || | | | || || | || | ||| | || || || || || | || Sbjct 198089 TGGACG-GAGCTCTTGTCTATCTTGGCATCGCGGAGGCACTTCTCCACAGGCTCCATACA 198147 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 ||| || | || || || |||||| |||| | ||| | || || | Sbjct 198148 CTTTCTGAATAGATCCATGTTGAGCTCCTCGAATCTAGCACGAGTGATTGTAGAATAGAA 198207 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 ||| |||||||| || | |||||||| ||||| || || || | | || |||| | Sbjct 198208 ATCGATTCCTTCAAAGAGAGAATCAATCTCAATGGTCGTCTGTGCAGTTGATGATAAAGT 198267 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTG--ATT 282135 || || || | || || | || || | | || |||| || ||| |||| | | Sbjct 198268 CCGCTTTGCTCTCTCGCAAGAGGTTCTCAAGCGTC-TAAGAGCCCTTG--GATTTCCACT 198324 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 | ||| |||| | ||| |||||||| |||| |||| | | || | | ||||| Sbjct 198325 GATATCCTTTTTGTGTTTCCTCTTGAACTCTTGAACAAAGTGGCTGACCAACCTGTTATC 198384 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||||||||||||||| | | ||| | || | ||| || | || | || | || || Sbjct 198385 AAAATCTTCACCTCCAAGATGAGTGTCACCGGCCGTGGCCTTGACCTCAAAGATGCCTTC 198444 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 ||| | | | ||||| |||||| |||||| ||||| | ||| |||||||| ||||| Sbjct 198445 TTCGATGGTGAGAAGAGAGACATCAAAGGTTCCGCCACCAAGATCGAAAATAAGAACATT 198504 Query 282316 CATTTCTTTGTCTT----GG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | | || | || |||||||| |||||||| || | ||||| ||||| || Sbjct 198505 CTTCTCGCCCACGCTAGAGGACTTTTTATCGAGACCATAGGCGATGGCAGCGGCAGTAGG 198564 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| ||||| | || |||||||||||||| || || ||||| || |||||||| Sbjct 198565 CTCATTGATAATGCGCATGACATTAAGACCAGCGATAACCCCAGCATCCTTGGTGGCTTG 198624 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | ||||||||||| || || || |||||||||| ||| |||| Sbjct 198625 GCGCTGTGAATCGTTGAAGTAAGCGGGAACAGTAACAACAGCAT 198668 >seq62680 Length=12704 Score = 118 bits (130), Expect = 8e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | || ||||||||||||||||||||| || || ||| |||| ||| || || Sbjct 9070 CCATAAGAAAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGGCCGGCG 9129 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || ||||| || || || || | || | ||| || ||||| || |||||||| Sbjct 9130 ATTCTCCCGGCATCCTTCGTCGCCTGCCGCTGAGCATCATTGAAATAAGCGGGAACAGTT 9189 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 || ||||| | || ||| |||||||| ||||| || |||| |||||| || | Sbjct 9190 ATCACGGCCTTTGAAACTGATTTTCCAAGGTAAGCTTCGGCAGTTTCTTTCATCTTCGTC 9249 Query 282524 AAAAT 282528 ||||| Sbjct 9250 AAAAT 9254 >seq140 Length=1825301 Score = 114 bits (126), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 || |||||||| || ||||| || || | | ||||| | |||||||||||||| ||| Sbjct 676319 GCCGCAGCAGTCGGCTCATTGATGATCCGGAGAACATCCAATCCAGCAATTCTTCCAGCA 676378 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCT 282475 ||||| || || |||| || | ||| |||||||| |||||||| || || ||||| | | Sbjct 676379 TCTTTTGTCGCCTGTCGCTGCGCATCATTAAAATAAGCAGGAACGGTGATCACGGCTTTT 676438 Query 282476 GTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGAT 282535 | ||| ||| |||| |||||| || |||| |||||| || ||| || | || Sbjct 676439 GAAACTGATTTACCAAGATAAGCCTCAGCGGTTTCTTTCATCTTGGTTAGAACAAATGCG 676498 Query 282536 GAAATTTGTTCTGGAGAATATTGCTTG-GATTCAT 282569 ||| || |||||||| |||| | |||||| Sbjct 676499 CCAATCTGACTCGGAGAATACTGCTGGCCATTCAT 676533 >seq2 Length=81761211 Score = 98.7 bits (108), Expect = 7e-15 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 |||| |||| ||||| |||| | ||| | | |||||| ||| |||||||| | Sbjct 47322223 ACTTCAAAAACTCCATTATCAATGGTCAAGATGCTCACATCAAAGGTGCCACCACCAAGG 47322164 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || || | ||| | ||| | || ||| | ||||| || ||||| |||| ||| Sbjct 47322163 TCGAAGACAAGAATGTTCTTCTCCCCACCTT---TCTTATCGAGTCCATAAGCAATGGCA 47322107 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 ||||||||||||||||| |||||||| |||||| || || ||||| ||| ||||| Sbjct 47322106 GCAGCAGTTGGTTCATTTATAATTCTGGCAACATTCAGTCCTGCAATCACTCCAGCATCC 47322047 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 || || || || || || | ||| || || || || Sbjct 47322046 TTCGTTGCCTGCCTCTGAGCATCATTGAAGTAAGC 47322012 >seq203 Length=2940243 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 ||||||| |||||||| |||||||| |||||||||||| |||| || |||||||| || Sbjct 34787 GTCGATTTCTCTTCTCCTAATATTGCCAAAGAAATGCATGTTGGCCACTTAAGATCCACA 34846 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 |||||||| || | ||| | | | || ||| | | || |||| ||| Sbjct 34847 ATTATTGGGGACACGCTTTCTCGAATGTTGGAATTTTCAAATGTTGAGGTTTTTCGACGA 34906 Query 637246 AATCATGTGGGTGATTGGGGAACTCA 637271 || ||||| ||||||||||||||||| Sbjct 34907 AACCATGTTGGTGATTGGGGAACTCA 34932 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 ||||||| |||||||| |||||||| |||||||||||| |||| || |||||||| || Sbjct 99458 GTCGATTTCTCTTCTCCCAATATTGCCAAAGAAATGCATGTTGGCCACTTAAGATCTACA 99517 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 |||||||| || | ||| | | | || ||| | | || |||| ||| Sbjct 99518 ATTATTGGGGACACACTTTCTCGAATGTTGGAATTTTCAAATGTTGAGGTTTTTCGACGA 99577 Query 637246 AATCATGTGGGTGATTGGGGAACTCA 637271 || ||||| ||||||||||||||||| Sbjct 99578 AACCATGTTGGTGATTGGGGAACTCA 99603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736232204181984