Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq89584 587 2e-163 seq2 300 5e-77 seq374 297 6e-76 seq64191 201 3e-47 >seq89584 Length=148959 Score = 587 bits (650), Expect = 2e-163 Identities = 715/963 (74%), Gaps = 14/963 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| | || |||||||| ||||||| || | | | | || || Sbjct 1110 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1051 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || || ||||| |||||||| || || ||||| || |||||||| || || || Sbjct 1050 -TCTGTATTTATCATTGCCTTCATTGCTGCCCCTCCAGTCGATATTGATGGTATTCGTGA 992 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || |||||||||||||| || || || || ||| | |||| | Sbjct 991 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 932 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | || || |||||||| |||||||| || ||||||| Sbjct 931 TTCCGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAG 874 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||| || || || | ||||| | || | ||||| | |||| | | Sbjct 873 TGGTTATACAATGGCGGTCCTTATGAACTTATTGTTCTACACTTTTTACTTGGTGTAGCT 814 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 813 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 754 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| ||||| || || | || || ||||| | ||||||| |||| Sbjct 753 GTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGCTGT-TTTCTTGATCTACCCTATTGG 695 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || || ||||| |||| ||||||||| || || || ||||| ||||||| |||| | Sbjct 694 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGAT 635 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || |||||||| ||||| || || |||||| | || || ||||| Sbjct 634 TGTATTCCAGGCAGAGCACAACATTCTTATGCATCCATTTCACATGTTAGGCGTAGCTGG 575 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT-G 20126 ||||||||| || || ||||||||||| ||||| ||||| ||| || | || | || Sbjct 574 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC-TTTGGTAACTTCTAGTTTAA 516 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGA 20184 | | || || |||||| | | |||| | || | ||||||| ||||| ||||| || Sbjct 515 TCAGGGAAACCACTGAAAATG--AGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGA 458 Query 20185 AGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGC 20244 ||| |||||||| || ||||||||||||||||| ||||| || |||||||||||||| || Sbjct 457 AGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 398 Query 20245 TTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGAT 20304 | |||||||||| |||||| | || |||||| | ||||| ||||| || || || || Sbjct 397 TAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTAT 338 Query 20305 TTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAA 20364 |||||| |||| ||||| || ||| |||||||| || |||||||||| || ||||| Sbjct 337 CTGGTTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAA 278 Query 20365 CCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCG 20424 ||| ||| | | || | | | |||||||| ||| | ||||||||||| || | ||||| Sbjct 277 CCAATCCGTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCG 218 Query 20425 TGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCT 20484 ||||||||| || | || || ||||||||||| ||||| || |||||||| || || || Sbjct 217 TGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCT 158 Query 20485 TGC 20487 || Sbjct 157 AGC 155 >seq2 Length=81761211 Score = 300 bits (332), Expect = 5e-77 Identities = 320/418 (77%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 20073 TCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GT 20131 |||| || || ||||||||||| ||||| ||||| | || || || | | || | | Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAATCAGG 48005824 Query 20132 GAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGA 20189 || || |||||| | || ||| | || | ||||||| ||||| ||||| ||||| | Sbjct 48005825 GAAACCACTGAAAATGA--GTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAA 48005882 Query 20190 CCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTT 20249 ||||||| || ||||||||||||||||| ||||| || |||||||||||||| ||| || Sbjct 48005883 CCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 48005942 Query 20250 TCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGT 20309 |||||||| |||||| | || |||||| | ||||| ||||| || || || || |||| Sbjct 48005943 TCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGT 48006002 Query 20310 TCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGT 20369 || |||| ||||| || ||| |||||||| || |||||||||| || |||||||| | Sbjct 48006003 TCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAAT 48006062 Query 20370 CCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTA 20429 || | | || | | | |||||||| ||| | ||||||||||| || | |||||||||| Sbjct 48006063 CCGTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTA 48006122 Query 20430 ATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 |||| || | || || ||||||||||| ||||| || |||||||| || || || || Sbjct 48006123 ATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGC 48006180 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 19736 TACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAA 19795 ||| |||| |||||||| | || ||||||| ||| | ||||| || || || | || Sbjct 22128483 TACTCAATATGGGAAGCAACATCTATTGATGAGTGGTTATACAATGGCGGTCCTTATGAA 22128542 Query 19796 CTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTT 19855 || | || | ||||| | ||||| | | ||||||||| || |||||||||||| Sbjct 22128543 ATTATTGTTCTACACTTTTTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTT 22128602 Query 19856 AGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCC 19915 || | | | || ||| ||||||||| |||||| || || ||||| ||||| || Sbjct 22128603 AGTTTCCATCAGGGTATGCACCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCGGCT 22128662 Query 19916 GC 19917 || Sbjct 22128663 GC 22128664 >seq374 Length=1248919 Score = 297 bits (328), Expect = 6e-76 Identities = 318/416 (76%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGA 20133 || || || ||||||||||| ||||| ||||| | || || || | | || | | || Sbjct 600774 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAATCAGGGA 600832 Query 20134 GACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACC 20191 || |||||| | || ||| | || | ||||||| ||||| ||||| ||||| ||| Sbjct 600833 AACCACTGAAAATGA--GTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACC 600890 Query 20192 TATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTC 20251 ||||| || ||||||||||||||||| ||||| || |||||||||||||| ||| |||| Sbjct 600891 TATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 600950 Query 20252 AACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTC 20311 |||||| |||||| | || |||||| | ||||| ||||| || || || || |||||| Sbjct 600951 AACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTC 601010 Query 20312 GCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371 |||| ||||| || ||| |||||||| || |||||||||| || |||||||| ||| Sbjct 601011 ACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCC 601070 Query 20372 CTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAT 20431 | | || | | | |||||||| ||| | ||||||||||| || | |||||||||||| Sbjct 601071 GTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAAT 601130 Query 20432 CTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || || | || || ||||||||||| ||||| || |||||||| || || || || Sbjct 601131 CTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGC 601186 >seq64191 Length=168564 Score = 201 bits (222), Expect = 3e-47 Identities = 357/511 (70%), Gaps = 10/511 (2%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||||| ||||||||||| | || || ||||| | ||||||| || | | | | Sbjct 58577 ACCAAAAACCGTCTTTACATCGGATGATTTGGTATTTTGATGATCCCTACTTTATTGACC 58636 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || || | ||| || || ||||| |||||||| || | |||| || |||||||| || Sbjct 58637 GCAACT-TATGCATTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTAT 58695 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || ||||| || || || || |||||||||||||| || || || | | | | | Sbjct 58696 TCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTAT 58755 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGT-TCACT 19761 ||| | | ||| || || || | || || |||||||| ||||||| ||| || | Sbjct 58756 TCCTACTTCCGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAG-TAGAATCTGT 58812 Query 19762 TGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGG 19821 |||||| ||| | |||||| || || | ||||| | || | |||| | |||| Sbjct 58813 TGATGAGTGGTTATACAACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGG 58872 Query 19822 CATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTG 19881 | | ||||||||| || |||||||||||||| | || || || ||| | ||||| Sbjct 58873 TGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTG 58932 Query 19882 GATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACC 19940 |||| |||||| || || ||||| ||||| || || | | || || || | |||||| Sbjct 58933 GATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAACTGT-TTACTTGATCTACC 58991 Query 19941 CGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACT 20000 | |||| || || || ||||| |||| ||||||||| || || || |||| ||||||| Sbjct 58992 CTATTGGCCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACT 59051 Query 20001 ACATGTTGGTATTCCAAGCCGAACATAACAT 20031 |||| | |||| ||| | || || ||||| Sbjct 59052 TCATGATTGTATGCCAGTCAGAGCACAACAT 59082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148670474434272