Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq89584 545 7e-151 seq2 295 2e-75 seq374 291 2e-74 seq64191 170 6e-38 >seq89584 Length=148959 Score = 545 bits (604), Expect = 7e-151 Identities = 702/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| | || |||||||| ||||||| || | | | | || || Sbjct 1110 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1051 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || || ||||| |||||||| || || ||||| || |||||||| || || || Sbjct 1050 -TCTGTATTTATCATTGCCTTCATTGCTGCCCCTCCAGTCGATATTGATGGTATTCGTGA 992 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| |||| ||| || ||||||||||| || || || || ||| | | || | Sbjct 991 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 932 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || |||||||| |||||||| || ||||||| Sbjct 931 TTCCGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTGTTGATGAG 874 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | ||||| || || || | ||||| | || | ||||| | |||| || | Sbjct 873 TGGTTATACAATGGCGGTCCTTATGAACTTATTGTTCTACACTTTTTACTTGGTGTAGCT 814 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||||||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 813 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 754 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || || || || | || |||||| | ||||||| | ||| Sbjct 753 GTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGCTGTTTTCTTGATCTACCCTATTGGT 694 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| ||| || | |||||||| || || || || || ||||||| |||| | Sbjct 693 CAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATT 634 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| ||||| || || |||||| | ||||| ||||| Sbjct 633 GTATTCCAGGCAGAGCACAACATTCTTATGCATCCATTTCACATGTTAGGCGTAGCTGGT 574 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| || || ||||| ||||| ||||| ||||| | || || || | | || Sbjct 573 GTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAAT 515 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || |||||| | ||| || | ||||||| ||||| ||||| ||||| Sbjct 514 CAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGA 455 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 || ||||| || ||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 454 AACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 395 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| | || |||||| | ||||| ||||| || || || || || Sbjct 394 TTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTG 335 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 |||| |||| ||||| || ||| |||||||| || ||||||||||||| |||||||| Sbjct 334 GTTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCA 275 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | | |||||||| ||||| |||||||||||| | | ||||| || Sbjct 274 ATCCGTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGC 215 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 ||| || || | |||||||||||||| |||||||| || |||||||| || ||||| || Sbjct 214 TAATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGC 155 Query 29616 T 29616 | Sbjct 154 T 154 >seq2 Length=81761211 Score = 295 bits (326), Expect = 2e-75 Identities = 317/417 (76%), Gaps = 2/417 (0%) Strand=Plus/Plus Query 29201 TCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GT 29259 |||| || || ||||| ||||| ||||| ||||| | || || || | | || | | Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAATCAGG 48005824 Query 29260 GAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACT 29319 || || |||||| | ||| || | ||||||| ||||| ||||| ||||| || Sbjct 48005825 GAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACC 48005884 Query 29320 TATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTC 29379 ||||| || ||||||||||| ||||| ||||| || |||||||||||||||||| |||| Sbjct 48005885 TATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 48005944 Query 29380 AATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTC 29439 || ||| |||||| | || |||||| | ||||| ||||| || || || || |||||| Sbjct 48005945 AACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTC 48006004 Query 29440 GCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCG 29499 |||| ||||| || ||| |||||||| || ||||||||||||| |||||||| || Sbjct 48006005 ACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCC 48006064 Query 29500 CTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAAC 29559 | | || | | | |||||||| ||||| |||||||||||| | | ||||| ||||| Sbjct 48006065 GTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAAT 48006124 Query 29560 CTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 || || | |||||||||||||| |||||||| || |||||||| || ||||| ||| Sbjct 48006125 CTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCT 48006181 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 28864 TACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAA 28923 ||| |||| |||||||| | || ||||||| ||| | ||||| || || || | || Sbjct 22128483 TACTCAATATGGGAAGCAACATCTATTGATGAGTGGTTATACAATGGCGGTCCTTATGAA 22128542 Query 28924 CTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTT 28983 || | || | ||||| | ||||| || | ||||||||| || |||||||||||| Sbjct 22128543 ATTATTGTTCTACACTTTTTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTT 22128602 Query 28984 AGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCG 29043 || | | | || ||| || |||||| ||| ||||| |||||||| || || || Sbjct 22128603 AGTTTCCATCAGGGTATGCACCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCGGCT 22128662 Query 29044 GC 29045 || Sbjct 22128663 GC 22128664 >seq374 Length=1248919 Score = 291 bits (322), Expect = 2e-74 Identities = 315/415 (76%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 29203 GGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGA 29261 || || || ||||| ||||| ||||| ||||| | || || || | | || | | || Sbjct 600774 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAATCAGGGA 600832 Query 29262 GACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTA 29321 || |||||| | ||| || | ||||||| ||||| ||||| ||||| || || Sbjct 600833 AACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 600892 Query 29322 TAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAA 29381 ||| || ||||||||||| ||||| ||||| || |||||||||||||||||| |||||| Sbjct 600893 TAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAA 600952 Query 29382 TAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGC 29441 ||| |||||| | || |||||| | ||||| ||||| || || || || |||||| | Sbjct 600953 CAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCAC 601012 Query 29442 TGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCT 29501 ||| ||||| || ||| |||||||| || ||||||||||||| |||||||| || | Sbjct 601013 TGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCCGT 601072 Query 29502 TCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCT 29561 | || | | | |||||||| ||||| |||||||||||| | | ||||| ||||| || Sbjct 601073 AGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAATCT 601132 Query 29562 CGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 || | |||||||||||||| |||||||| || |||||||| || ||||| ||| Sbjct 601133 TGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCT 601187 >seq64191 Length=168564 Score = 170 bits (188), Expect = 6e-38 Identities = 346/509 (68%), Gaps = 6/509 (1%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||||| ||||||||||| | || || ||||| | ||||||| || | | | | Sbjct 58577 ACCAAAAACCGTCTTTACATCGGATGATTTGGTATTTTGATGATCCCTACTTTATTGACC 58636 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || || | ||| || || ||||| |||||||| || | |||| || |||||||| || Sbjct 58637 GCAACT-TATGCATTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTAT 58695 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || |||||||| |||| ||| || ||||||||||| || || || | | | | | Sbjct 58696 TCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTAT 58755 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | ||| || || || | || || |||||||| ||||||| | || || Sbjct 58756 TCCTACTTCCGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTT 58813 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||| ||| | |||||| || || | ||||| | || | |||| | |||| Sbjct 58814 GATGAGTGGTTATACAACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGT 58873 Query 28951 GTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGG 29010 || | ||||||||| || |||||||||||||| | || || || ||| | || ||| Sbjct 58874 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGG 58933 Query 29011 ATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCA 29070 ||| ||| ||||| |||||||| || || || || | | |||| | | ||||||| Sbjct 58934 ATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAACTGTTTACTTGATCTACCCT 58993 Query 29071 TTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTAC 29130 | || ||||| ||| || | |||||||| || || || || | ||||||| | Sbjct 58994 ATTGGCCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTC 59053 Query 29131 ATGCTGGTGTTCCAAGCCGAACATAACAT 29159 ||| | || | ||| | || || ||||| Sbjct 59054 ATGATTGTATGCCAGTCAGAGCACAACAT 59082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146509575668064