Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq89584 605 8e-169 seq2 279 1e-70 seq374 275 2e-69 seq64191 221 3e-53 >seq89584 Length=148959 Score = 605 bits (670), Expect = 8e-169 Identities = 732/986 (74%), Gaps = 18/986 (2%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| | |||||||| || ||||||||||| ||||| |||||||| ||||||| | Sbjct 1130 ACTGGATTACCAGTACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCC 1071 Query 18791 CGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTA 18849 | | | | | || ||| | ||| || || ||||||||||||||||| ||||| || Sbjct 1070 CTACTTTATTGACCGCAACT-TCTGTATTTATCATTGCCTTCATTGCTGCCCCTCCAGTC 1012 Query 18850 GACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATA 18909 || |||||||| || || || |||||| | || ||| |||||||||||||| || || Sbjct 1011 GATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATC 952 Query 18910 TCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGG 18967 || || ||| | |||| | | ||| || || || | || || |||||||| |||| Sbjct 951 TCAGGTGCCATTATTCCTACTTCCGCA--GCTATAGGTTTGCATTTTTACCCAATATGGG 894 Query 18968 AAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCC 19027 |||| || ||||||| ||| | ||||| || || || | ||||| | || | | Sbjct 893 AAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTTATTGTTCTAC 834 Query 19028 ACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAG 19087 |||| | |||| || | ||||||||| || |||||||||||||| | || || | Sbjct 833 ACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGG 774 Query 19088 GGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCT 19147 | ||||||||||||||| |||||| || |||||||||||||| || || | || || | Sbjct 773 GTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGCTGTTT 714 Query 19148 TCCTTGTCTATCCATTTGGTCAAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATTA 19204 || | |||| || |||||||||| || || | || | ||||||||| || || Sbjct 713 TCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATAT 657 Query 19205 GTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGT 19264 |||||| ||||||| |||| ||||||||||||| || || ||||| || ||||| || | Sbjct 656 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATTCTTATGCATCCAT 597 Query 19265 TCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTT 19324 | |||||| | || || |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 596 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTT 537 Query 19325 CGCTTGTTACGTCCTCGCTT-GTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGC 19383 | ||| || | || | || | | ||||| |||||| | | ||| || | || Sbjct 536 C-TTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGT 478 Query 19384 TACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGT 19443 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| |||||||| Sbjct 477 TACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGGC 418 Query 19444 CGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCT 19503 || | || ||||| || || ||||||||| |||||| | |||||||| |||||| Sbjct 417 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCT 358 Query 19504 GCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGGCATTCA 19561 ||||||||||| || || || ||||| | | ||| ||||| || || ||||| |||| Sbjct 357 GCTTGGCCTGTAGTGGGTATCTGGTTCACTG--CTTTGGGTATTAGTACTATGGCGTTCA 300 Query 19562 ACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATA 19621 ||||||| || ||||| |||||||| ||| | |||| | | | |||||||| ||| | | Sbjct 299 ACTTGAACGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCGTGTTATTAACA 240 Query 19622 CTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATG 19681 |||||||||| || | ||||||||||| || || | || |||||||| |||||||||| Sbjct 239 CTTGGGCTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 19682 CTCATAACTTCCCACTTGATTTGGCT 19707 | || |||||||| || ||| | ||| Sbjct 179 CACACAACTTCCCTCTAGATCTAGCT 154 >seq2 Length=81761211 Score = 279 bits (308), Expect = 1e-70 Identities = 316/419 (75%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 19292 TCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GT 19350 ||||||| || ||||| ||||| ||||| ||||| | || || || | | || | | Sbjct 48005766 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAATCAGG 48005824 Query 19351 GAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACT 19410 ||||| |||||| | | ||| || | || |||| ||||| ||||| ||||| || Sbjct 48005825 GAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACC 48005884 Query 19411 TATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTC 19470 ||||| ||||| || |||||||| |||||||| || | || ||||| || || ||| Sbjct 48005885 TATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 48005944 Query 19471 AACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTT 19530 |||||| |||||| | |||||||| ||||||||||||||||| || || || ||||| Sbjct 48005945 AACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTC 48006004 Query 19531 GCCGCCCTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGT 19588 | | ||| ||||| || || ||||| ||||||||||| || ||||| |||||||| | Sbjct 48006005 ACTG--CTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAAT 48006062 Query 19589 CCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTA 19648 || | |||| | | | |||||||| ||| | ||||||||||| || | |||||||||| Sbjct 48006063 CCGTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTA 48006122 Query 19649 ACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 | || || | || |||||||| ||||||||||| || |||||||| || ||| | ||| Sbjct 48006123 ATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCT 48006181 Score = 111 bits (122), Expect = 4e-20 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 18955 TACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAA 19014 ||| |||| |||||||| | || ||||||| ||| | ||||| || || || | || Sbjct 22128483 TACTCAATATGGGAAGCAACATCTATTGATGAGTGGTTATACAATGGCGGTCCTTATGAA 22128542 Query 19015 CTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTT 19074 || | || | ||||| | ||||| || | ||||||||| || |||||||||||| Sbjct 22128543 ATTATTGTTCTACACTTTTTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTT 22128602 Query 19075 AGCTATCGACTAGGG-ATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGC 19133 || | || | |||| |||| |||||||||| |||||| || |||||||||||||| || Sbjct 22128603 AG-TTTCCATCAGGGTATGCACCCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCGGC 22128661 Query 19134 AGC 19136 || Sbjct 22128662 TGC 22128664 >seq374 Length=1248919 Score = 275 bits (304), Expect = 2e-69 Identities = 314/417 (75%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 19294 GGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGA 19352 ||||| || ||||| ||||| ||||| ||||| | || || || | | || | | || Sbjct 600774 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACTTC-TAGTTTAATCAGGGA 600832 Query 19353 AACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTA 19412 ||| |||||| | | ||| || | || |||| ||||| ||||| ||||| || || Sbjct 600833 AACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTA 600892 Query 19413 TAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAA 19472 ||| ||||| || |||||||| |||||||| || | || ||||| || || ||||| Sbjct 600893 TAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAA 600952 Query 19473 CAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGC 19532 |||| |||||| | |||||||| ||||||||||||||||| || || || ||||| | Sbjct 600953 CAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGGTTCAC 601012 Query 19533 CGCCCTTGGGGTA--AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCC 19590 | ||| ||||| || || ||||| ||||||||||| || ||||| |||||||| ||| Sbjct 601013 TG--CTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAATCC 601070 Query 19591 CTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAC 19650 | |||| | | | |||||||| ||| | ||||||||||| || | ||||||||||| Sbjct 601071 GTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCTAAT 601130 Query 19651 CTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 || || | || |||||||| ||||||||||| || |||||||| || ||| | ||| Sbjct 601131 CTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCT 601187 >seq64191 Length=168564 Score = 221 bits (244), Expect = 3e-53 Identities = 356/506 (70%), Gaps = 12/506 (2%) Strand=Plus/Plus Query 18751 AACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACT 18810 ||||||||||| ||||| || ||||| | ||||||| || | | | | || ||| Sbjct 58583 AACCGTCTTTACATCGGATGATTTGGTATTTTGATGATCCCTACTTTATTGACCGCAACT 58642 Query 18811 ATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAG 18870 | || || ||||||||||||||||| |||| | || |||||||| || || || Sbjct 58643 TATGCATTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTATTCGTGAA 58702 Query 18871 CCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG- 18929 |||||| | || ||| |||||||||||||| || || || | | | | |||| | Sbjct 58703 CCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTATTCCTACT 58762 Query 18930 -CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAAT 18988 | ||| || || || | || || |||||||| ||||||| | || ||||||| | Sbjct 58763 TCCGCA--GCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTTGATGAGT 58820 Query 18989 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATG 19048 || | |||||| || || | ||||| | || | |||| | |||| || | Sbjct 58821 GGTTATACAACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGTGTAGCTT 58880 Query 19049 CTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTG 19108 ||||||||| || |||||||||||||| | || || || ||| ||||||||||| || Sbjct 58881 GTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTGCTG 58940 Query 19109 TTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTG-TCTATCCATTTGGT 19167 |||| || |||||||||||||| || || | | || || |||| |||| || |||| Sbjct 58941 TTGCATATTCAGCTCCTGTTGCGGCTGCTACAACTGT-TTACTTGATCTACCCTATTGGC 58999 Query 19168 CAAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATG 19224 |||| ||| || | || | ||||||||| || || ||||| ||||||| |||| Sbjct 59000 CAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTCATG 59056 Query 19225 CTTGTATTCCAGGCTGAACATAACAT 19250 |||||| |||| | || || ||||| Sbjct 59057 ATTGTATGCCAGTCAGAGCACAACAT 59082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140998644495072