Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq293 260 2e-63 seq36 226 4e-53 >seq293 Length=413263 Score = 260 bits (288), Expect = 2e-63 Identities = 395/551 (72%), Gaps = 21/551 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| | ||||| ||| ||||||| |||||||||| | ||| ||||| |||||| | Sbjct 226502 AACCCCGATCGCTTCTGTA-TGTTCCCGATCCGCTACCCTCAGATTTGGGAGATGTACAA 226560 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC- 1455851 |||| | |||||||| || ||||| || || |||||||| ||| | | ||| || Sbjct 226561 GAAAG-CAGAGGCCTCTTTCTGGACTGCGGAAGAGGTCGATCTCTCA--CAAGACGTTCG 226617 Query 1455852 -CACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 || |||| | || | | ||||||||||| || |||| ||||||| ||||| Sbjct 226618 GCAATGGGATCACACCCTCACCTCTGACGAGCGCCACTTTATCACCTACGTCCTGGCCTT 226677 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 || |||||| ||||| |||||| |||||||| ||||| ||||| ||| ||||| Sbjct 226678 CTT-CGCCGCTTCTGATGGTATCGTGCTGGAGAACCTCGCCGGACGCTTCATGCGAGAGG 226736 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | ||| | || ||||| || || || || ||||||||||||||||||||||| |||| Sbjct 226737 TTCAACTTCCGGAGGCGCGCGCTTTCTATGGCTTCCAGATCGCCATCGAAAACATTCACT 226796 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || | || || || |||| |||||| |||||||| | ||| || | | | Sbjct 226797 CCGAGATGTATAGTCTTCTCCTCGAGACCTACATCAAGGACTCCACCGAAAAATCCAATC 226856 Query 1456088 TCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGT 1456147 | |||||||||||||| || || || | || ||||| | ||||| || | Sbjct 226857 TTTTTCGCGCCATCGAAACCGTACCCTGCGTCGCCCGTAAGGCTCAGTGGGCACTGCGCT 226916 Query 1456148 GGATCAACAAGGAGGGCCTC-GACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTC 1456204 |||| || ||||| || | ||||| |||||| | ||| ||||| ||||| Sbjct 226917 GGATTGAC-------GCCTCTGAATCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTC 226969 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 || || || || ||||| ||||| |||||||||||||| ||||||||||||||||| | Sbjct 226970 GAAGGTATTTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTG 227029 Query 1456265 ATGCCCGGTCT 1456275 ||||| ||||| Sbjct 227030 ATGCCAGGTCT 227040 >seq36 Length=6822877 Score = 226 bits (250), Expect = 4e-53 Identities = 382/542 (70%), Gaps = 17/542 (3%) Strand=Plus/Minus Query 1455741 ACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCC 1455800 ||||||| | |||| || |||||||||| | ||| ||||| |||||| | |||| || Sbjct 1784191 ACCGCTTCTGCATGTTTCCGATCCGCTACCCTCAGATCTGGGAGATGTACAAGAAAG-CC 1784133 Query 1455801 GAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGG- 1455858 || ||||| || ||||| || || || || || || | || | | | ||||||| Sbjct 1784132 GAAGCCTCTTTCTGGACAGCAGAAGAAGTTGATCTGTCCCAAGATCTCCG-CCACTGGAA 1784074 Query 1455859 TG--TCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCG 1455916 || || || | | |||||| || |||||| | | ||||| ||||| ||| ||||||| Sbjct 1784073 TGAATCCCTCACCTCCGACGAACGGCATTTCGTAACCCACGTTCTCGC-TTTCTTCGCCG 1784015 Query 1455917 CCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGC 1455976 | ||| || ||||| |||||||| || |||||||| ||| ||||| || | | Sbjct 1784014 CTTCCGACGGAATCGTTCTAGAGAACCTCGCTGGCCGCTTCATGCGGGAGGTACAGCTCC 1783955 Query 1455977 CAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCT 1456036 | ||||| || || || || || |||||||||||||||||||||||||| || | | Sbjct 1783954 CGGAGGCGCGCGCTTTCTATGGATTTCAGATCGCCATCGAAAACATCCACTCCGAGATGT 1783895 Query 1456037 ACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCG 1456096 || || || |||| |||||| |||| ||| | | ||||| |||||||| | | Sbjct 1783894 ACAGCCTGCTTCTCGAAACCTACATCAAAGACTCCGCAGAGAAATCGCACCTCTTCCATG 1783835 Query 1456097 CCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACA 1456156 | ||||| || || || | || ||||| | ||||| | |||||| || Sbjct 1783834 CTATCGAGACCGTTCCCTGCGTCGCCCGCAAGGCACAGTGGGCTCTCCGCTGGATCGAC- 1783776 Query 1456157 AGGAGGGCCT-CGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATC 1456213 |||| ||| | ||||| ||||| | | | ||||| |||| ||||||||| Sbjct 1783775 ------GCCTCCGATTCTTTTGCAGAGCGAATTCTTGCATTTGCTTGCGTTGAGGGCATC 1783722 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||||| || ||||||||||||||||| ||||| |||||| | || || ||||| ||| Sbjct 1783721 TTCTTCTCTGGTAGTTTCTGCGCCATCTTCTGGCTGAAGAAGAGAGGGCTAATGCCTGGT 1783662 Query 1456274 CT 1456275 || Sbjct 1783661 CT 1783660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7169170658544608