Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq91 107 2e-18 seq293 98.7 1e-15 seq36 96.9 4e-15 >seq2 Length=81761211 Score = 134 bits (148), Expect = 2e-26 Identities = 337/508 (66%), Gaps = 8/508 (2%) Strand=Plus/Plus Query 11432 AGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATA 11491 |||||||| || ||| |||||| | || || | || | ||| ||| ||||| Sbjct 31018693 AGACCCACCTG--TCT----ATCAAACCTTCCAGGCCTTAGCAAAGCGGAATCCAGGATG 31018746 Query 11492 TCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATC 11551 || |||| ||||| || |||| ||| | || || || | ||||| |||||||| Sbjct 31018747 TCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAACCATCCATT 31018806 Query 11552 TCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA 11611 || || | | || || | ||||||||||| |||||||| | | ||| | Sbjct 31018807 TCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCAATACCCGTT 31018866 Query 11612 CTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCG 11671 | |||||| | || || |||||||| ||||||| ||| |||||||| ||| ||| || Sbjct 31018867 CCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAAGGTGCATTCTCT 31018926 Query 11672 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACA 11731 || | | || ||||| ||||||| | ||| || ||||||||||||||||||||| Sbjct 31018927 TTAGCCTTCTTGAAAAGATCACGAACCCGTGAGGCGCCAACACCAACAAACATCTCCACA 31018986 Query 11732 AAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCG 11791 || | | | ||| || || || ||| | |||||| || ||||| ||| Sbjct 31018987 AACTCAGATCCTGAGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAATGGCCTTGGCA 31019046 Query 11792 AGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCA 11851 || || |||||||| ||||| || ||| |||||| | ||| || || ||| Sbjct 31019047 AGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACACCTTTAGGTATACGAGCA 31019106 Query 11852 CCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC-AATCTCTTCAAGTTCATC 11910 || || | | || || |||| ||| ||||| ||||| | | | | || | | | Sbjct 31019107 CCGACAGCAGTAAACCTTTCTGGTTTCTTAAGAAACTCCACTACTTCCATGAAATCCTGC 31019166 Query 11911 TTTGGCCGCGTCAATCCCCTCAACATCA 11938 ||| || | |||| ||| |||||||| Sbjct 31019167 TTT-GCTTCATCAACCCCAGCAACATCA 31019193 >seq91 Length=344896 Score = 107 bits (118), Expect = 2e-18 Identities = 250/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || ||||||||||||||||| | Sbjct 231907 AAATCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTACC--- 231851 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| ||||| | | ||| | || |||||||||||||| ||||| || ||||| Sbjct 231850 ACCACCAAGCCCAGCCCCTCTCTGCCTTCCAACCGCATCAATCTCGTCAATAAAAACAAT 231791 Query 11656 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||| || |||||| || | ||||| | ||| | |||||| || || || Sbjct 231790 ACAGGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTTGAAGCTCCAACT 231733 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 |||||||| | || ||||| | || |||| ||| | ||| || ||| | || Sbjct 231732 CCAACAAAAAGTTCAACAAACTCTGAAGCAGCACACGAAAAGAAGGGCACACCAGCCTCG 231673 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || |||| || || || || || ||||| || || || ||| || | | |||| Sbjct 231672 CCGGCGACCGCCCGAGCTAGCAGCGTCTTCCCAGTTCCCGGCGGCCCAACCAAAAGGCAA 231613 Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893 ||| ||| ||||| |||||| | ||| | || || | ||| | |||||| || Sbjct 231612 CCTTTGGGAATCTTAGCACCAAGAGCCGTGTATTTATCAGGATTCTTCAAAAAATCGACG 231553 Query 11894 ATCTCTTCAAGTTC 11907 | |||| ||| || Sbjct 231552 ACTTCTTGAAGCTC 231539 >seq293 Length=413263 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || |||||| ||||| || || || || || || || || || |||||| Sbjct 227094 GCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCT 227035 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| |||||||| | ||| | || |||||||| ||||||||||| ||| Sbjct 227034 GGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATA 226975 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || || |||||||| || | || || || || || || ||| || |||| | Sbjct 226974 CCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAATGATTCAGA---GGCGTCAATC 226918 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || || |||||| | ||||| | | || ||||| |||| |||||| Sbjct 226917 CAGCGCAGTGCCCACTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGC 226865 >seq36 Length=6822877 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || |||||||| || |||||||| || || || || ||||| Sbjct 1783606 GCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAAAAGTGAGACCA 1783665 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || | |||||||| ||| | || |||||||| || ||||||||||| Sbjct 1783666 GGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAGAAACTACCAGAGAAGAAGATG 1783725 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| || || ||||| |||| || || || || || || Sbjct 1783726 CCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGA 1783766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627328729766400