Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 2e-26
seq91 107 2e-18
seq293 98.7 1e-15
seq36 96.9 4e-15
>seq2
Length=81761211
Score = 134 bits (148), Expect = 2e-26
Identities = 337/508 (66%), Gaps = 8/508 (2%)
Strand=Plus/Plus
Query 11432 AGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATA 11491
|||||||| || ||| |||||| | || || | || | ||| ||| |||||
Sbjct 31018693 AGACCCACCTG--TCT----ATCAAACCTTCCAGGCCTTAGCAAAGCGGAATCCAGGATG 31018746
Query 11492 TCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATC 11551
|| |||| ||||| || |||| ||| | || || || | ||||| ||||||||
Sbjct 31018747 TCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAACCATCCATT 31018806
Query 11552 TCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA 11611
|| || | | || || | ||||||||||| |||||||| | | ||| |
Sbjct 31018807 TCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCAATACCCGTT 31018866
Query 11612 CTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCG 11671
| |||||| | || || |||||||| ||||||| ||| |||||||| ||| ||| ||
Sbjct 31018867 CCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAAGGTGCATTCTCT 31018926
Query 11672 CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACA 11731
|| | | || ||||| ||||||| | ||| || |||||||||||||||||||||
Sbjct 31018927 TTAGCCTTCTTGAAAAGATCACGAACCCGTGAGGCGCCAACACCAACAAACATCTCCACA 31018986
Query 11732 AAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCG 11791
|| | | | ||| || || || ||| | |||||| || ||||| |||
Sbjct 31018987 AACTCAGATCCTGAGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAATGGCCTTGGCA 31019046
Query 11792 AGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCA 11851
|| || |||||||| ||||| || ||| |||||| | ||| || || |||
Sbjct 31019047 AGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACACCTTTAGGTATACGAGCA 31019106
Query 11852 CCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC-AATCTCTTCAAGTTCATC 11910
|| || | | || || |||| ||| ||||| ||||| | | | | || | | |
Sbjct 31019107 CCGACAGCAGTAAACCTTTCTGGTTTCTTAAGAAACTCCACTACTTCCATGAAATCCTGC 31019166
Query 11911 TTTGGCCGCGTCAATCCCCTCAACATCA 11938
||| || | |||| ||| ||||||||
Sbjct 31019167 TTT-GCTTCATCAACCCCAGCAACATCA 31019193
>seq91
Length=344896
Score = 107 bits (118), Expect = 2e-18
Identities = 250/374 (67%), Gaps = 10/374 (3%)
Strand=Plus/Minus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| ||||||||||| || | | |||||||| || ||||||||||||||||| |
Sbjct 231907 AAATCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTACC--- 231851
Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655
|||| ||||| | | ||| | || |||||||||||||| ||||| || |||||
Sbjct 231850 ACCACCAAGCCCAGCCCCTCTCTGCCTTCCAACCGCATCAATCTCGTCAATAAAAACAAT 231791
Query 11656 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713
||| || |||||| || | ||||| | ||| | |||||| || || ||
Sbjct 231790 ACAGGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTTGAAGCTCCAACT 231733
Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773
|||||||| | || ||||| | || |||| ||| | ||| || ||| | ||
Sbjct 231732 CCAACAAAAAGTTCAACAAACTCTGAAGCAGCACACGAAAAGAAGGGCACACCAGCCTCG 231673
Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833
|| |||| || || || || || ||||| || || || ||| || | | ||||
Sbjct 231672 CCGGCGACCGCCCGAGCTAGCAGCGTCTTCCCAGTTCCCGGCGGCCCAACCAAAAGGCAA 231613
Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893
||| ||| ||||| |||||| | ||| | || || | ||| | |||||| ||
Sbjct 231612 CCTTTGGGAATCTTAGCACCAAGAGCCGTGTATTTATCAGGATTCTTCAAAAAATCGACG 231553
Query 11894 ATCTCTTCAAGTTC 11907
| |||| ||| ||
Sbjct 231552 ACTTCTTGAAGCTC 231539
>seq293
Length=413263
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/233 (70%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || |||||| ||||| || || || || || || || || || ||||||
Sbjct 227094 GCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCT 227035
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| | ||| |||||||| | ||| | || |||||||| ||||||||||| |||
Sbjct 227034 GGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATA 226975
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838
|| || || |||||||| || | || || || || || || ||| || |||| |
Sbjct 226974 CCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAATGATTCAGA---GGCGTCAATC 226918
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|| || |||||| | ||||| | | || ||||| |||| ||||||
Sbjct 226917 CAGCGCAGTGCCCACTGAGCCTTACGGGCGACGCAGGGTACGGTTTCGATGGC 226865
>seq36
Length=6822877
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| || |||||||| || |||||||| || || || || |||||
Sbjct 1783606 GCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAAAAGTGAGACCA 1783665
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
||||| || || | |||||||| ||| | || |||||||| || |||||||||||
Sbjct 1783666 GGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAGAAACTACCAGAGAAGAAGATG 1783725
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819
||||| || || ||||| |||| || || || || || ||
Sbjct 1783726 CCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGA 1783766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627328729766400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |