Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq293 111 2e-19
seq2 105 8e-18
seq36 102 1e-16
>seq293
Length=413263
Score = 111 bits (122), Expect = 2e-19
Identities = 121/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || |||||| ||||||||||| |||||||| || || || || ||||||
Sbjct 227094 GCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCT 227035
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
||||| | ||| |||||||| | |||||| || || || || ||| |||||||| ||
Sbjct 227034 GGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATA 226975
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176
|| || || ||||| || || | | ||||||||||| ||
Sbjct 226974 CCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAATGA 226934
>seq2
Length=81761211
Score = 105 bits (116), Expect = 8e-18
Identities = 227/334 (68%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155
|| ||||| || |||||| || || || | || | ||| || || | |||||
Sbjct 31018738 TCCAGGATGTCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAA 31018797
Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215
|||||||| |||||||| || || || | |||||||| | |||||||||| | |
Sbjct 31018798 CCATCCATTTCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCA 31018857
Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275
||||| | |||||| | || || || ||||||||||| | ||| || ||||| |||
Sbjct 31018858 ATACCCGTTCCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAAGGT 31018917
Query 14276 TGATTTTC-ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 14334
||| || | | ||| ||| | ||| || || | ||| || ||||| |||||
Sbjct 31018918 GCATTCTCTTTAGCCTTCTTGAAA-AGATCACGAACCCGTGAGGCGCCAACACCAACAAA 31018976
Query 14335 CATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGA 14393
|||||||||||| | | | | | || | || ||||| || || |||||| || |
Sbjct 31018977 CATCTCCACAAACTCAGATCCTG-AGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAA 31019035
Query 14394 TGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
|||| ||| || || ||||| || || || ||
Sbjct 31019036 TGGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 31019069
>seq36
Length=6822877
Score = 102 bits (112), Expect = 1e-16
Identities = 186/272 (68%), Gaps = 3/272 (1%)
Strand=Plus/Plus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| || ||||| ||||| || || || || || || || |||||
Sbjct 1783606 GCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAAAAGTGAGACCA 1783665
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
||||| || || | |||||||| |||||| || || || || ||||||||||||||
Sbjct 1783666 GGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAGAAACTACCAGAGAAGAAGATG 1783725
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195
||||| || || || || |||| | ||||| ||||| || ||| | || | |
Sbjct 1783726 CCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGAATCGGA---GGCGTCGATC 1783782
Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255
|| | |||||||| ||||| ||| || || ||||||| ||| || | |||
Sbjct 1783783 CAGCGGAGAGCCCACTGTGCCTTGCGGGCGACGCAGGGAACGGTCTCGATAGCATGGAAG 1783842
Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287
|| | | || |||| | |||||||||||
Sbjct 1783843 AGGTGCGATTTCTCTGCGGAGTCTTTGATGTA 1783874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617742676263040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |