Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq293 111 2e-19 seq2 105 8e-18 seq36 102 1e-16 >seq293 Length=413263 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || |||||| ||||||||||| |||||||| || || || || |||||| Sbjct 227094 GCAAAGTCGCAGTGGAGTCCCTCGTCACGAGAGATGAGCTCGTTAGAAAAAGTGAGACCT 227035 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| |||||||| | |||||| || || || || ||| |||||||| || Sbjct 227034 GGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAAATA 226975 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || || ||||| || || | | ||||||||||| || Sbjct 226974 CCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAATGA 226934 >seq2 Length=81761211 Score = 105 bits (116), Expect = 8e-18 Identities = 227/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || ||||| || |||||| || || || | || | ||| || || | ||||| Sbjct 31018738 TCCAGGATGTCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTTCAAAA 31018797 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| |||||||| || || || | |||||||| | |||||||||| | | Sbjct 31018798 CCATCCATTTCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCTCCA 31018857 Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275 ||||| | |||||| | || || || ||||||||||| | ||| || ||||| ||| Sbjct 31018858 ATACCCGTTCCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAAGGT 31018917 Query 14276 TGATTTTC-ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 14334 ||| || | | ||| ||| | ||| || || | ||| || ||||| ||||| Sbjct 31018918 GCATTCTCTTTAGCCTTCTTGAAA-AGATCACGAACCCGTGAGGCGCCAACACCAACAAA 31018976 Query 14335 CATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGA 14393 |||||||||||| | | | | | || | || ||||| || || |||||| || | Sbjct 31018977 CATCTCCACAAACTCAGATCCTG-AGATAGAGAAAAAGGGAACACCAGCTTCACCAGCAA 31019035 Query 14394 TGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 |||| ||| || || ||||| || || || || Sbjct 31019036 TGGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 31019069 >seq36 Length=6822877 Score = 102 bits (112), Expect = 1e-16 Identities = 186/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || ||||| ||||| || || || || || || || ||||| Sbjct 1783606 GCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAAAAGTGAGACCA 1783665 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || | |||||||| |||||| || || || || |||||||||||||| Sbjct 1783666 GGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAGAAACTACCAGAGAAGAAGATG 1783725 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 ||||| || || || || |||| | ||||| ||||| || ||| | || | | Sbjct 1783726 CCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGAATCGGA---GGCGTCGATC 1783782 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 || | |||||||| ||||| ||| || || ||||||| ||| || | ||| Sbjct 1783783 CAGCGGAGAGCCCACTGTGCCTTGCGGGCGACGCAGGGAACGGTCTCGATAGCATGGAAG 1783842 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 || | | || |||| | ||||||||||| Sbjct 1783843 AGGTGCGATTTCTCTGCGGAGTCTTTGATGTA 1783874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617742676263040