Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 seq293 150 2e-31 seq36 145 9e-30 seq91 98.7 1e-15 >seq2 Length=81761211 Score = 172 bits (190), Expect = 6e-38 Identities = 322/463 (70%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9613 ||| ||||| || |||| || || || || | || | |||||||| ||| || || Sbjct 31018737 ATCCAGGATGTCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTT--CA 31018794 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || |||||||| ||||| | ||||||||| | |||||||||| | Sbjct 31018795 AAACCATCCATTTCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCT 31018854 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| | | |||||| |||| || |||||||| ||||||| ||| || || || Sbjct 31018855 CCAATACCCGTTCCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAA 31018914 Query 9734 GGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 ||| ||| || ||| ||| ||| ||||| || || || |||||| |||||||| Sbjct 31018915 GGTGCATTCTCTTTAGCCTTCTTGAAA-AGATCACGAACCCGTGAGGCGCCAACACCAAC 31018973 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||||||||| | | | | | || | || ||||| ||| || |||||| | Sbjct 31018974 AAACATCTCCACAAACTCAGATCCTG-AGATAGAGAAAAAGGGAACACCAGCTTCACCAG 31019032 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 ||||||| ||| || |||||||| || ||||| || ||| ||| || ||||| Sbjct 31019033 CAATGGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACACCTT 31019092 Query 9912 GTGGAATCTTGGCGCC-ACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || || || || || | ||| | || || |||| ||||||||| ||||| | Sbjct 31019093 TAGGTATACGAGCACCGACAGC---AGTAAACCTTTCTGGTTTCTTAAGAAACTCCACTA 31019149 Query 9969 TTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||| || || | || || | |||| ||| ||||||| Sbjct 31019150 CTTCCATGAAATCCTGCTTTGCTTCATCAACCCCAGCAACATC 31019192 >seq293 Length=413263 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || ||||||||||| | |||| |||||||| || || ||||| |||||||| || | Sbjct 226934 TCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCAGC 226993 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| ||| | |||||||||||| || || ||| Sbjct 226994 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCTAAC 227053 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| |||||||||||||||||||||||| || ||||| Sbjct 227054 GAGCTCATCTCTCGTGACGAGGGACTCCACTGCGACTTTGC 227094 >seq36 Length=6822877 Score = 145 bits (160), Expect = 9e-30 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 ||| ||||| |||||| | | |||||||| || |||||||| ||||||||||||||| Sbjct 1783767 TTCTTTTGCAGAGCGAATTCTTGCATTTGCTTGCGTTGAGGGCATCTTCTTCTCTGGTAG 1783708 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||||||| || | ||||| |||||| |||| || ||||| |||||| || ||||| Sbjct 1783707 TTTCTGCGCCATCTTCTGGCTGAAGAAGAGAGGGCTAATGCCTGGTCTCACTTTTTCCAA 1783648 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||||||||| |||||||| ||||| || ||| || |||||| Sbjct 1783647 CGAGCTTATTTCTCGTGATGAGGGCCTGCACTGTGACTTTGCG 1783605 >seq91 Length=344896 Score = 98.7 bits (108), Expect = 1e-15 Identities = 246/368 (67%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 9670 ||| ||||||||||| ||||| || || ||||| || ||||| | |||||||| | | Sbjct 231907 AAATCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTACCACC 231848 Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 || | ||||| | | ||| |||| || ||||||||||| ||||| || || || Sbjct 231847 ACCAAGC--CCAGCCCCTCTCTGCCTTCCAACCGCATCAATCTCGTCAATAAAAACAATA 231790 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786 || || |||||| | || ||||| | ||||| ||| |||| || || || Sbjct 231789 CAGGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCC--TCACCCTTGAAGCTCCAAC 231734 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 |||||||| | || ||||| | || || | ||| | |||||| ||| || || Sbjct 231733 TCCAACAAAAAGTTCAACAAACTCTGAAGCAGCACACGAAAAGAAGGGCACACCAGCCTC 231674 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || || | || || || || || ||||| || || || ||| || | | ||| Sbjct 231673 GCCGGCGACCGCCCGAGCTAGCAGCGTCTTCCCAGTTCCCGGCGGCCCAACCAAAAGGCA 231614 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||| |||||||| || ||| | |||| | ||||| | ||| | |||||| || Sbjct 231613 ACCTTTGGGAATCTTAGCACCAAGAGCCGTGTATTTATCAGGATTCTTCAAAAAATCGAC 231554 Query 9967 AATTTCTT 9974 | ||||| Sbjct 231553 GACTTCTT 231546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582607664556160