Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 6e-38
seq293 150 2e-31
seq36 145 9e-30
seq91 98.7 1e-15
>seq2
Length=81761211
Score = 172 bits (190), Expect = 6e-38
Identities = 322/463 (70%), Gaps = 14/463 (3%)
Strand=Plus/Plus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9613
||| ||||| || |||| || || || || | || | |||||||| ||| || ||
Sbjct 31018737 ATCCAGGATGTCTGCGCGGTTAGTAGCTGCAAGAACTATGATACCTGTATTTCCTT--CA 31018794
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
||||||||||| || |||||||| ||||| | ||||||||| | |||||||||| |
Sbjct 31018795 AAACCATCCATTTCAGTCAAAAGCTGGTTCAGAGTTTGTTCTCTTTCATCATTCCCCCCT 31018854
Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733
| ||| | | |||||| |||| || |||||||| ||||||| ||| || || ||
Sbjct 31018855 CCAATACCCGTTCCTCGTTGCCTTCCAACAGCATCAATTTCATCAACGAATACAATACAA 31018914
Query 9734 GGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792
||| ||| || ||| ||| ||| ||||| || || || |||||| ||||||||
Sbjct 31018915 GGTGCATTCTCTTTAGCCTTCTTGAAA-AGATCACGAACCCGTGAGGCGCCAACACCAAC 31018973
Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851
||||||||||||||| | | | | | || | || ||||| ||| || |||||| |
Sbjct 31018974 AAACATCTCCACAAACTCAGATCCTG-AGATAGAGAAAAAGGGAACACCAGCTTCACCAG 31019032
Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911
||||||| ||| || |||||||| || ||||| || ||| ||| || |||||
Sbjct 31019033 CAATGGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACACCTT 31019092
Query 9912 GTGGAATCTTGGCGCC-ACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968
|| || || || || | ||| | || || |||| ||||||||| ||||| |
Sbjct 31019093 TAGGTATACGAGCACCGACAGC---AGTAAACCTTTCTGGTTTCTTAAGAAACTCCACTA 31019149
Query 9969 TTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011
||| || || | || || | |||| ||| |||||||
Sbjct 31019150 CTTCCATGAAATCCTGCTTTGCTTCATCAACCCCAGCAACATC 31019192
>seq293
Length=413263
Score = 150 bits (166), Expect = 2e-31
Identities = 130/161 (81%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| ||||||||||| | |||| |||||||| || || ||||| |||||||| || |
Sbjct 226934 TCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCAGC 226993
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | |||||||||||||| ||| | |||||||||||| || || |||
Sbjct 226994 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCTAAC 227053
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||| |||||||||||||||||||||||| || |||||
Sbjct 227054 GAGCTCATCTCTCGTGACGAGGGACTCCACTGCGACTTTGC 227094
>seq36
Length=6822877
Score = 145 bits (160), Expect = 9e-30
Identities = 130/163 (80%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853
||| ||||| |||||| | | |||||||| || |||||||| |||||||||||||||
Sbjct 1783767 TTCTTTTGCAGAGCGAATTCTTGCATTTGCTTGCGTTGAGGGCATCTTCTTCTCTGGTAG 1783708
Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913
|||||||| || | ||||| |||||| |||| || ||||| |||||| || |||||
Sbjct 1783707 TTTCTGCGCCATCTTCTGGCTGAAGAAGAGAGGGCTAATGCCTGGTCTCACTTTTTCCAA 1783648
Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956
||||||||| |||||||| ||||| || ||| || ||||||
Sbjct 1783647 CGAGCTTATTTCTCGTGATGAGGGCCTGCACTGTGACTTTGCG 1783605
>seq91
Length=344896
Score = 98.7 bits (108), Expect = 1e-15
Identities = 246/368 (67%), Gaps = 12/368 (3%)
Strand=Plus/Minus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 9670
||| ||||||||||| ||||| || || ||||| || ||||| | |||||||| | |
Sbjct 231907 AAATCCATCCATCTCAGTCAAGAGCTGATTAATGGTCTGTTCTCTCTCATCATTACCACC 231848
Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
|| | ||||| | | ||| |||| || ||||||||||| ||||| || || ||
Sbjct 231847 ACCAAGC--CCAGCCCCTCTCTGCCTTCCAACCGCATCAATCTCGTCAATAAAAACAATA 231790
Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 9786
|| || |||||| | || ||||| | ||||| ||| |||| || || ||
Sbjct 231789 CAGGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCC--TCACCCTTGAAGCTCCAAC 231734
Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846
|||||||| | || ||||| | || || | ||| | |||||| ||| || ||
Sbjct 231733 TCCAACAAAAAGTTCAACAAACTCTGAAGCAGCACACGAAAAGAAGGGCACACCAGCCTC 231674
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906
|| || | || || || || || ||||| || || || ||| || | | |||
Sbjct 231673 GCCGGCGACCGCCCGAGCTAGCAGCGTCTTCCCAGTTCCCGGCGGCCCAACCAAAAGGCA 231614
Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966
|||| |||||||| || ||| | |||| | ||||| | ||| | |||||| ||
Sbjct 231613 ACCTTTGGGAATCTTAGCACCAAGAGCCGTGTATTTATCAGGATTCTTCAAAAAATCGAC 231554
Query 9967 AATTTCTT 9974
| |||||
Sbjct 231553 GACTTCTT 231546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582607664556160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |