Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq293 114 1e-20
seq36 107 2e-18
>seq293
Length=413263
Score = 114 bits (126), Expect = 1e-20
Identities = 372/566 (66%), Gaps = 15/566 (3%)
Strand=Plus/Plus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| || || || ||||| | | |||| |||| |||||||| | || ||||||
Sbjct 226523 TTCCCGATCCGCTACCCTCAGATTTGGGAGATGTACAAGAAAGCAGAGGCCTCTTTCTGG 226582
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGA---CAAGCTCAATTAC 59678
| | || ||| | || ||| | |||| | | | ||||| || |||| |
Sbjct 226583 ACTGCGGAAGAGGTCGATCTCTCACAAGACGTTCGGCAATGGGATCACACCCTCACCTCT 226642
Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738
||||||| || || |||| ||||||||||||||||| || |||||| || |||
Sbjct 226643 GACGAGCGCCACTTTATCACCTACGTCCTGGCCTTCTTCGCCGCTTCTGATGGTATCGTG 226702
Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCG 59795
|||| || | | | | || ||| | | || || || || | ||||| || |
Sbjct 226703 CTGGAGAACCTCGCC--GGACGCTTC-ATGCGAGAGGTTCAACTTCCGGAGGCGCGCGCT 226759
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||| | | ||| ||| || ||| || |||||||||| ||| || | |
Sbjct 226760 TTCTATGGCTTCCAGATCGC-CATCGAAAACATTCACTCCGAGATGTATAGTCTTCTCCT 226818
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GT 59913
||| | | ||||||| | || || | ||| || || ||||| || || ||
Sbjct 226819 CGAGACCTACATCAAGGACTCCACCGAAAAATCCAATCTTTTTCGCGCCATCGAAACCGT 226878
Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA 59972
||| || || | || || | ||||| ||| ||||| || ||| | ||||
Sbjct 226879 ACCCTGC-GTCGCCCGTAAGGCTCAGTGGGCACTGCGCTGGATTGACGCCTCT-GAATCA 226936
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
||||| | || | | |||||||| ||||| ||||| || |||||||| ||| |||
Sbjct 226937 TTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCAGCTTC 226996
Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092
|| || || ||||||||||| ||||| || | ||||| || || | ||| || ||||||
Sbjct 226997 TGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCTAACGAG 227056
Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118
|| || || || |||||||| |||||
Sbjct 227057 CTCATCTCTCGTGACGAGGGACTCCA 227082
>seq36
Length=6822877
Score = 107 bits (118), Expect = 2e-18
Identities = 204/295 (69%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885
||||||||||||| |||| || | |||| | | |||| || | | ||||||
Sbjct 1783910 ATCCACTCCGAGATGTACAGCCTGCTTCTCGAAACCTACATCAAAGACTCCGCAGAGAAA 1783851
Query 59886 GCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944
| || |||| ||| || ||||| || ||| || || | || ||| | |||||
Sbjct 1783850 TCGCACCTCTTCCATGCTATCGAGACCGTTCCCTGC-GTCGCCCGCAAGGCACAGTGGGC 1783792
Query 59945 CATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003
| | ||||| || ||| | || |||||| | || | | || ||||| ||||
Sbjct 1783791 TCTCCGCTGGATCGACGCCTCC-GATTCTTTTGCAGAGCGAATTCTTGCATTTGCTTGCG 1783733
Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063
| || || |||||||||||||| ||||| || || |||||||| || ||| | || |
Sbjct 1783732 TTGAGGGCATCTTCTTCTCTGGTAGTTTCTGCGCCATCTTCTGGCTGAAGAAGAGAGGGC 1783673
Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
| ||||| || || | ||| ||||||||||| ||||| || || |||||||| ||
Sbjct 1783672 TAATGCCTGGTCTCACTTTTTCCAACGAGCTTATTTCTCGTGATGAGGGCCTGCA 1783618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547910561928960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |