Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq293 114 1e-20 seq36 107 2e-18 >seq293 Length=413263 Score = 114 bits (126), Expect = 1e-20 Identities = 372/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || || ||||| | | |||| |||| |||||||| | || |||||| Sbjct 226523 TTCCCGATCCGCTACCCTCAGATTTGGGAGATGTACAAGAAAGCAGAGGCCTCTTTCTGG 226582 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGA---CAAGCTCAATTAC 59678 | | || ||| | || ||| | |||| | | | ||||| || |||| | Sbjct 226583 ACTGCGGAAGAGGTCGATCTCTCACAAGACGTTCGGCAATGGGATCACACCCTCACCTCT 226642 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || || |||| ||||||||||||||||| || |||||| || ||| Sbjct 226643 GACGAGCGCCACTTTATCACCTACGTCCTGGCCTTCTTCGCCGCTTCTGATGGTATCGTG 226702 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAG---GATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| || | | | | || ||| | | || || || || | ||||| || | Sbjct 226703 CTGGAGAACCTCGCC--GGACGCTTC-ATGCGAGAGGTTCAACTTCCGGAGGCGCGCGCT 226759 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||| | | ||| ||| || ||| || |||||||||| ||| || | | Sbjct 226760 TTCTATGGCTTCCAGATCGC-CATCGAAAACATTCACTCCGAGATGTATAGTCTTCTCCT 226818 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GT 59913 ||| | | ||||||| | || || | ||| || || ||||| || || || Sbjct 226819 CGAGACCTACATCAAGGACTCCACCGAAAAATCCAATCTTTTTCGCGCCATCGAAACCGT 226878 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA 59972 ||| || || | || || | ||||| ||| ||||| || ||| | |||| Sbjct 226879 ACCCTGC-GTCGCCCGTAAGGCTCAGTGGGCACTGCGCTGGATTGACGCCTCT-GAATCA 226936 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| | || | | |||||||| ||||| ||||| || |||||||| ||| ||| Sbjct 226937 TTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCAGCTTC 226996 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || | ||||| || || | ||| || |||||| Sbjct 226997 TGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCTAACGAG 227056 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || || || |||||||| ||||| Sbjct 227057 CTCATCTCTCGTGACGAGGGACTCCA 227082 >seq36 Length=6822877 Score = 107 bits (118), Expect = 2e-18 Identities = 204/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 ||||||||||||| |||| || | |||| | | |||| || | | |||||| Sbjct 1783910 ATCCACTCCGAGATGTACAGCCTGCTTCTCGAAACCTACATCAAAGACTCCGCAGAGAAA 1783851 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | || |||| ||| || ||||| || ||| || || | || ||| | ||||| Sbjct 1783850 TCGCACCTCTTCCATGCTATCGAGACCGTTCCCTGC-GTCGCCCGCAAGGCACAGTGGGC 1783792 Query 59945 CATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003 | | ||||| || ||| | || |||||| | || | | || ||||| |||| Sbjct 1783791 TCTCCGCTGGATCGACGCCTCC-GATTCTTTTGCAGAGCGAATTCTTGCATTTGCTTGCG 1783733 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 | || || |||||||||||||| ||||| || || |||||||| || ||| | || | Sbjct 1783732 TTGAGGGCATCTTCTTCTCTGGTAGTTTCTGCGCCATCTTCTGGCTGAAGAAGAGAGGGC 1783673 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || || | ||| ||||||||||| ||||| || || |||||||| || Sbjct 1783672 TAATGCCTGGTCTCACTTTTTCCAACGAGCTTATTTCTCGTGATGAGGGCCTGCA 1783618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547910561928960