Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq36 109 6e-19 seq293 105 7e-18 seq300 95.1 1e-14 seq550 89.7 6e-13 >seq36 Length=6822877 Score = 109 bits (120), Expect = 6e-19 Identities = 270/397 (68%), Gaps = 16/397 (4%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||| | || |||||||| || || | |||||||| ||| |||||||| ||| Sbjct 1783645 TCGTTGGAAAAAGTGAGACCAGGCATTAGCCCTCTCTTCTTCAGCCAGAAGATGGCGCAG 1783704 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || |||| |||||||||||| || || || ||||| || | || || | || || Sbjct 1783705 AAACTACCAGAGAAGAAGATGCCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAA- 1783763 Query 74910 GGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 | |||||| ||| ||||| ||||||| | || || || || ||||||| Sbjct 1783764 --AGAATCGGAGGCGTCGATCCAGCGGAGAGCCCACTGTGCCTTGCGGGCGA-CGCAGGG 1783820 Query 74967 -ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGT 75024 || || ||||| || ||||||||| | |||||| ||| || |||| | || || | Sbjct 1783821 AACGGTCTCGATAGCATGGAAGAGGTGCGATTTCTCTGCGGAGTCTTTGATGTAGGTT-T 1783879 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAG 75083 | | | || |||| |||| || || || ||| || ||| ||| | | ||| Sbjct 1783880 CGAGAAGCAGGCTGTACATCTCGGAGTGGATGTTTTCGATG-GCGATCTGAAATCCATAG 1783938 Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCC--TTTGAAAAATTCATGTCGATATTCTCCA 75141 |||| |||||||| | | |||||| ||| |||| || ||| ||||| | Sbjct 1783939 AAAGCGCGCGCCTCCGGGAGCTGTACCTCCCGCATGAAGCGGCCA--GCGAGGTTCTCTA 1783996 Query 75142 TGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 ||||| ||||| || |||||||| ||||| || || Sbjct 1783997 GAACGATTCCGTCGGAAGCGGCGAAGAAAGCGAGAAC 1784033 >seq293 Length=413263 Score = 105 bits (116), Expect = 7e-18 Identities = 280/418 (67%), Gaps = 10/418 (2%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||| | || || ||||| | || |||||||| | ||| |||||||| ||| Sbjct 227055 TCGTTAGAAAAAGTGAGACCTGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAG 226996 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||| || |||||| || |||||||| |||||||| |||| || || | || || Sbjct 226995 AAGCTGCCGGAGAAGAAAATACCTTCGACGCACGCAAAAGCGAGAATCCGCTCAGCAAAT 226936 Query 74910 GGTGCATCGGAAGTCA-TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-A 74967 | | || || |||| |||| | | ||||| | ||| || || ||| |||||| | Sbjct 226935 GATTCAGAGGC-GTCAATCCAGCGCAGTGCCCACTGAGCCTTACGGGCGAC-GCAGGGTA 226878 Query 74968 CAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAA 75027 | || ||||| || | || || | | || || || ||||||| | | || | Sbjct 226877 CGGTTTCGATGGCGCGAAAAAGATTGGATTTTTCGGTGGAGTCCTTGATGTAGGTCTCGA 226818 Query 75028 TCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAA 75086 | ||| ||| |||| || ||||| ||| || ||| |||| | | |||||| Sbjct 226817 GGAGAAGACTATACATCTCGGAGTGAATGTTTTCGATGG-CGATCTGGAAGCCATAGAAA 226759 Query 75087 GACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGA 75144 | |||||||| | || || || || |||| | | | ||| ||||||| | Sbjct 226758 GCGCGCGCCTCCGGAAGTTGAACCTCTCGCATGAAGCGTCC--GGCGAGGTTCTCCAGCA 226701 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 |||| || || || |||||||| || ||||| || |||||||||||||||| || Sbjct 226700 CGATACCATCAGAAGCGGCGAAGAAGGCCAGGACGTAGGTGATAAAGTGGCGCTCGTC 226643 >seq300 Length=612754 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 406206 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 406265 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 406266 TGAGCTACGAAAGC 406279 >seq550 Length=3874528 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3171445 TGCTCTCGTTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3171504 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 3171505 TGAGCTACGAGAGC 3171518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546603227523200