Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq89584 540 1e-148 seq64191 215 6e-51 seq374 205 1e-47 seq2 205 1e-47 >seq89584 Length=148959 Score = 540 bits (598), Expect = 1e-148 Identities = 717/993 (72%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 || ||| | ||| | |||| ||| | ||| | ||||| | || ||||||||||| | Sbjct 1137 TTCTGCAACTGGATTACCAGTACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1078 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 ||||| || | | | || || | | ||| |||||| |||| || ||||| || || Sbjct 1077 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATCATTGCCTTCATTGCTGCCCC 1019 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || |||||||| || |||||||| ||||| || | || |||||||| ||||||||||| Sbjct 1018 TCCAGTCGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 959 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 || |||||||| || | | || | || || || || | || || |||||||| Sbjct 958 TATTATCTCAGGTGCCATTATTCCTACTTCCGCAGCTATAGGTTTGCATTTTTACCCAAT 899 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||||||| | ||||| || ||| | |||||||| || || || |||| |||| Sbjct 898 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAACTTATTGT 839 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAG 176471 | ||||| | | ||| | | ||||||||| || | ||||||||||||| | | Sbjct 838 TCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 176472 ACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGC 176531 || || ||||| |||||||| ||||||||| || || || || | || || | || Sbjct 778 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACAGC 719 Query 176532 AGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCAT 176591 |||||| | |||| || | ||||||||| ||||||||||||||||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 176592 TTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCC 176651 || ||||| |||||||| ||| |||||||||| ||||||||||||||||| ||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAGCACAACATTCTTATGCATCC 599 Query 176652 ATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGG 176711 ||| || ||| | || ||||| ||||| || || || || || ||| || ||||| || Sbjct 598 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 539 Query 176712 AAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGG 176771 | | || |||||| | | || || || || ||||| || || || | || Sbjct 538 TTCTTTGGTAACTTCTAGTTTAATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGG 479 Query 176772 TTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGG 176831 ||||| ||| || ||||| ||||| || || || |||||||| || || ||||| ||||| Sbjct 478 TTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCCGCTCATGGTTATTTTGG 419 Query 176832 TCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGC 176891 || | |||||||| |||||| |||||| || || | | || |||||| | || Sbjct 418 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGC 359 Query 176892 AGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAA 176951 || | || || || | |||||||| ||||| ||||| || | || ||||| ||||| Sbjct 358 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTGGGTATTAGTACTATGGCGTTCAA 299 Query 176952 CCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTAC 177011 | | |||||||| || || ||||| || || | || | | ||| || ||| || Sbjct 298 CTTGAACGGTTTTAATTTTAACCAATCCGTAGTTGATAGCCAAGGTCGTGTTATTAACAC 239 Query 177012 ATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGC 177071 |||| |||||| | || ||||| || |||||||||||||| ||||| || |||||||| Sbjct 238 TTGGGCTGATATCATAAATCGTGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGC 179 Query 177072 TCACAACTTCCCACTTGACCTTGCTGCTGCAGA 177104 ||||||||||| || || || ||| ||| ||| Sbjct 178 ACACAACTTCCCTCTAGATCTAGCTTCTGTAGA 146 >seq64191 Length=168564 Score = 215 bits (238), Expect = 6e-51 Identities = 308/434 (71%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 |||||| |||| || ||||| || | || | |||||| || |||||||| ||||| || Sbjct 58649 TTTATCATTGCCTTCATTGCTGCCTCTCCAGCCGATATTGATGGTATTCGTGAACCTGTT 58708 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || |||||||| ||||||||||| || |||||| | | | | || | || Sbjct 58709 TCTGGGTCTCTACTTTATGGAAACAATATTATCTCAAGTGTCATTATTCCTACTTCCGCA 58768 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || |||||||| ||||||| || | | ||||| || ||| | ||| Sbjct 58769 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGAATCTGTTGATGAGTGGTTATAC 58828 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || || || || |||| |||| | |||| | | ||| | | ||||||| Sbjct 58829 AACAACGGTCCTTATGAACTTATTGTTCTATACTTTTTACTTGGTGTAGCTTGTTACATG 58888 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || ||| | |||||||| ||||||||| Sbjct 58889 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTGCTGTTGCATAT 58948 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | | |||| | | |||| || | || |||||| | Sbjct 58949 TCAGCTCCTGTTGCGGCTGCTACAACTGTTTACTTGATCTACCCTATTGGCCAAGGAAGT 59008 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||||||||||||||||| | || || || |||| |||||||| ||| |||||| ||| Sbjct 59009 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTAATTTCAACTTCATGATTGTATGCCAG 59068 Query 176626 GCAGAGCACAACAT 176639 ||||||||||||| Sbjct 59069 TCAGAGCACAACAT 59082 >seq374 Length=1248919 Score = 205 bits (226), Expect = 1e-47 Identities = 266/368 (72%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || || ||||| || || || | ||||||| ||| || ||||| ||||| Sbjct 600828 AGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAA 600887 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || || || |||||||| || || ||||| ||||| || | |||||||| |||||| | Sbjct 600888 ACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 600947 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| || || | | || |||||| | || || | || || || | |||||| Sbjct 600948 TTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGG 601007 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 || ||||| ||||| || | || ||||| |||||| | |||||||| || || ||||| Sbjct 601008 TTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAA 601067 Query 176977 TCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCA 177036 || || | || | | ||| || ||| || |||| |||||| | || ||||| Sbjct 601068 TCCGTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCT 601127 Query 177037 AACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 || |||||||||||||| ||||| || |||||||| ||||||||||| || || || ||| Sbjct 601128 AATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCT 601187 Query 177097 GCTGCAGA 177104 ||| ||| Sbjct 601188 TCTGTAGA 601195 >seq2 Length=81761211 Score = 205 bits (226), Expect = 1e-47 Identities = 266/368 (72%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || || ||||| || || || | ||||||| ||| || ||||| ||||| Sbjct 48005822 AGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAA 48005881 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || || || |||||||| || || ||||| ||||| || | |||||||| |||||| | Sbjct 48005882 ACCTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 48005941 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| || || | | || |||||| | || || | || || || | |||||| Sbjct 48005942 TTCAACAATTCCCGTTCCTTGCATTTCTTCTTGGCTGCTTGGCCTGTAGTGGGTATCTGG 48006001 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 || ||||| ||||| || | || ||||| |||||| | |||||||| || || ||||| Sbjct 48006002 TTCACTGCTTTGGGTATTAGTACTATGGCGTTCAACTTGAACGGTTTTAATTTTAACCAA 48006061 Query 176977 TCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCA 177036 || || | || | | ||| || ||| || |||| |||||| | || ||||| Sbjct 48006062 TCCGTAGTTGATAGCCAAGGTCGTGTTATTAACACTTGGGCTGATATCATAAATCGTGCT 48006121 Query 177037 AACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 || |||||||||||||| ||||| || |||||||| ||||||||||| || || || ||| Sbjct 48006122 AATCTTGGTATGGAAGTAATGCATGAACGTAATGCACACAACTTCCCTCTAGATCTAGCT 48006181 Query 177097 GCTGCAGA 177104 ||| ||| Sbjct 48006182 TCTGTAGA 48006189 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 ||| |||| ||||||||| || | |||| || ||| | |||||||| || || || || Sbjct 22128483 TACTCAATATGGGAAGCAACATCTATTGATGAGTGGTTATACAATGGCGGTCCTTATGAA 22128542 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTT 176463 | |||| | ||||| | || ||| | | ||||||||| || | ||||||||| Sbjct 22128543 ATTATTGTTCTACACTTTTTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTT 22128602 Query 176464 AGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGT 176516 |||| | | || |||| |||||||| ||||||||| || || || || Sbjct 22128603 AGTTTCCATCAGGGTATGCACCCTTGGATTGTTGTTGCATATTCAGCTCCTGT 22128655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602818606970880